Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_B20
(478 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC015462-1|AAH15462.1| 106|Homo sapiens mitochondrial ribosomal... 106 3e-23
AF151897-1|AAD34134.1| 106|Homo sapiens CGI-139 protein protein. 106 3e-23
AC006006-2|AAD43190.1| 106|Homo sapiens unknown protein. 106 3e-23
BC105793-1|AAI05794.1| 112|Homo sapiens MRPS33 protein protein. 105 1e-22
BC101474-1|AAI01475.1| 1249|Homo sapiens BRCA1 interacting prote... 29 8.3
BC101472-1|AAI01473.1| 1249|Homo sapiens BRCA1 interacting prote... 29 8.3
AF360549-1|AAK38111.1| 1249|Homo sapiens BRCA1-binding helicase-... 29 8.3
>BC015462-1|AAH15462.1| 106|Homo sapiens mitochondrial ribosomal
protein S33 protein.
Length = 106
Score = 106 bits (255), Expect = 3e-23
Identities = 52/93 (55%), Positives = 65/93 (69%)
Frame = +3
Query: 177 INASTTYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHK 356
+++ + YA RM RLS R+FGEV PTNSKSMKVVK+FS PL +E +YP H +
Sbjct: 1 MSSLSEYAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAE 60
Query: 357 LMMNLRDYGLFRDEHQDFKEEMKRLRELRXKVK 455
LM LR GL+RDEHQDF +E KRL++LR K K
Sbjct: 61 LMQTLRFLGLYRDEHQDFMDEQKRLKKLRGKEK 93
>AF151897-1|AAD34134.1| 106|Homo sapiens CGI-139 protein protein.
Length = 106
Score = 106 bits (255), Expect = 3e-23
Identities = 52/93 (55%), Positives = 65/93 (69%)
Frame = +3
Query: 177 INASTTYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHK 356
+++ + YA RM RLS R+FGEV PTNSKSMKVVK+FS PL +E +YP H +
Sbjct: 1 MSSLSEYAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAE 60
Query: 357 LMMNLRDYGLFRDEHQDFKEEMKRLRELRXKVK 455
LM LR GL+RDEHQDF +E KRL++LR K K
Sbjct: 61 LMQTLRFLGLYRDEHQDFMDEQKRLKKLRGKEK 93
>AC006006-2|AAD43190.1| 106|Homo sapiens unknown protein.
Length = 106
Score = 106 bits (255), Expect = 3e-23
Identities = 52/93 (55%), Positives = 65/93 (69%)
Frame = +3
Query: 177 INASTTYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHK 356
+++ + YA RM RLS R+FGEV PTNSKSMKVVK+FS PL +E +YP H +
Sbjct: 1 MSSLSEYAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAE 60
Query: 357 LMMNLRDYGLFRDEHQDFKEEMKRLRELRXKVK 455
LM LR GL+RDEHQDF +E KRL++LR K K
Sbjct: 61 LMQTLRFLGLYRDEHQDFMDEQKRLKKLRGKEK 93
>BC105793-1|AAI05794.1| 112|Homo sapiens MRPS33 protein protein.
Length = 112
Score = 105 bits (251), Expect = 1e-22
Identities = 51/93 (54%), Positives = 65/93 (69%)
Frame = +3
Query: 177 INASTTYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHK 356
+++ + YA RM RLS R+FGEV PTNSKSMKVVK+FS PL +E +YP H +
Sbjct: 1 MSSLSEYAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAE 60
Query: 357 LMMNLRDYGLFRDEHQDFKEEMKRLRELRXKVK 455
LM LR GL+RDEHQDF +E KRL++LR + K
Sbjct: 61 LMQTLRFLGLYRDEHQDFMDEQKRLKKLRGEEK 93
>BC101474-1|AAI01475.1| 1249|Homo sapiens BRCA1 interacting protein
C-terminal helicase 1 protein.
Length = 1249
Score = 29.1 bits (62), Expect = 8.3
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 384 LFRDEHQDFKEEMKRLRELRXKVKVWRR 467
++RDE+ DF+ E KR+R L ++ +R
Sbjct: 146 IYRDENDDFQVEKKRIRPLETTQQIRKR 173
>BC101472-1|AAI01473.1| 1249|Homo sapiens BRCA1 interacting protein
C-terminal helicase 1 protein.
Length = 1249
Score = 29.1 bits (62), Expect = 8.3
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 384 LFRDEHQDFKEEMKRLRELRXKVKVWRR 467
++RDE+ DF+ E KR+R L ++ +R
Sbjct: 146 IYRDENDDFQVEKKRIRPLETTQQIRKR 173
>AF360549-1|AAK38111.1| 1249|Homo sapiens BRCA1-binding
helicase-like protein BACH1 protein.
Length = 1249
Score = 29.1 bits (62), Expect = 8.3
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 384 LFRDEHQDFKEEMKRLRELRXKVKVWRR 467
++RDE+ DF+ E KR+R L ++ +R
Sbjct: 146 IYRDENDDFQVEKKRIRPLETTQQIRKR 173
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,544,224
Number of Sequences: 237096
Number of extensions: 1335451
Number of successful extensions: 2685
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2685
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4213781852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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