Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_B18
         (480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    91   4e-19
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799...    29   1.5  
05_03_0446 + 14111667-14111906,14112011-14112418                       27   6.0  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    27   7.9  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 43/76 (56%), Positives = 57/76 (75%)
 Frame = +2

Query: 86  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 265
           +S +E+AC  +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI 
Sbjct: 1   MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLIL 60

Query: 266 NIGSGVGAAPAAGWSA 313
           ++GSG GAAP A  +A
Sbjct: 61  SVGSGGGAAPVAAAAA 76


>02_02_0220 -
           7992124-7992351,7992458-7992562,7993499-7993711,
           7993937-7994196,7994425-7994701,7995226-7995371,
           7995519-7995903,7996680-7996964
          Length = 632

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +2

Query: 50  GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKIST 172
           G+R+LA+     V+K +     S  +L+ +DVA+TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289


>05_03_0446 + 14111667-14111906,14112011-14112418
          Length = 215

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 24/80 (30%), Positives = 33/80 (41%)
 Frame = -1

Query: 291 AAPTPEPMLVIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE* 112
           AAP P+     R  +L P+K+LA+      S+S AA           TA S + R   E 
Sbjct: 99  AAPGPKRFTARRHVSLRPTKSLAHLSPARASSSAAAG------GGSATAPSGACRYDVEG 152

Query: 111 THANSAFDTIFSFERASCRR 52
           ++A    D   S      RR
Sbjct: 153 SYAARCLDVFASASAGEQRR 172


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 158 HQLRQHHHPPG*EQSKH 108
           HQ R+HHHPP  +   H
Sbjct: 562 HQRRRHHHPPAWDVEGH 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,395,878
Number of Sequences: 37544
Number of extensions: 229557
Number of successful extensions: 645
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)