Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_B14
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 128 8e-31
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 128 8e-31
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 29 0.65
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 28 0.87
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 28 1.1
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 26 4.6
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 6.1
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 25 6.1
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 8.1
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 128 bits (308), Expect = 8e-31
Identities = 69/153 (45%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Frame = +1
Query: 88 LREYEVIGRKLPFGERAQASLXIK*EFSLRIQLSPNLXFWYFLRQLKKFKKTTGEIVXXX 267
L+EY+V+GRK+P L F+ ++ + +WYFL+ + K KK TGEIV
Sbjct: 3 LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKS-RYWYFLKMINKVKKATGEIVAIN 61
Query: 268 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYXDMGAXHRARAHSIQ 447
FGIW+RY+SRSG HNMY+E+RD + GAV Y DM A HRAR SI+
Sbjct: 62 EISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIR 121
Query: 448 IIK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR 543
I+K VEV K RR VKQ N ++FPLP R
Sbjct: 122 ILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHR 154
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 128 bits (308), Expect = 8e-31
Identities = 69/153 (45%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Frame = +1
Query: 88 LREYEVIGRKLPFGERAQASLXIK*EFSLRIQLSPNLXFWYFLRQLKKFKKTTGEIVXXX 267
L+EY+V+GRK+P L F+ ++ + +WYFL+ + K KK TGEIV
Sbjct: 3 LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKS-RYWYFLKMINKVKKATGEIVAIN 61
Query: 268 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYXDMGAXHRARAHSIQ 447
FGIW+RY+SRSG HNMY+E+RD + GAV Y DM A HRAR SI+
Sbjct: 62 EISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIR 121
Query: 448 IIK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR 543
I+K VEV K RR VKQ N ++FPLP R
Sbjct: 122 ILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHR 154
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 28.7 bits (61), Expect = 0.65
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 390 HSVLXRYGSXTQSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQH 518
HS R G+ T + +L + + SN G + TG T+P H
Sbjct: 99 HSASPRQGNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNAH 141
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 28.3 bits (60), Expect = 0.87
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 306 KVLNLDGAFLWNFLNRDNFTSGLLELLKLSQEIPEXEIWRQLDP 175
K +NL +W F +R NF LL KL++ + +W DP
Sbjct: 420 KAMNLRKIHVWEF-SRMNFVRTLLSKRKLTEIVDHGLVWGWDDP 462
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -2
Query: 412 PYLYSTE*QLHLHSGHGIHGTCCVHPNETHSVARYQSS*S*WGFSLEF 269
P L S+ +LHSG HG HP+ S+ S S SL+F
Sbjct: 125 PSLLSSNATSYLHSGSSPHGNTSNHPSPISSLESLPSRSSTGSGSLDF 172
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 108 RPQAPFRRTSPSLPXYKMRIFSPDPIV 188
RP +P T+PS P + R FSP P V
Sbjct: 390 RPVSPCS-TAPSSPTFSTRSFSPTPDV 415
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -3
Query: 531 WESDGAVVELFDLWTATRSSLDY 463
WE G V+ + W A S DY
Sbjct: 145 WEKLGVTVDTYPYWDAKNRSFDY 167
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -3
Query: 264 NRDNFTSGLLELLKLSQEIPEXEIWRQLDPERKFSFYXKGGLGSFSERE 118
N D G++ L L I E I + PE+ + + LG ++RE
Sbjct: 87 NEDPTVHGIIVQLPLPAHINEQIITEAVAPEKDVDGFCETNLGKLTKRE 135
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +3
Query: 351 VP*IP*PECRWSCHSVLXRYGSXTQSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHH 521
+P P P + +VL ++ SS + SNQ +SPST + HH
Sbjct: 68 LPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHH 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,194
Number of Sequences: 5004
Number of extensions: 42665
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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