Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_B14
(581 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 133 1e-31
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 130 6e-31
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 120 6e-28
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 31 0.89
07_03_0033 + 12656255-12656297,12657402-12657408,12657484-126580... 29 3.6
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173... 29 3.6
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 28 6.2
11_06_0007 - 19171122-19172036 27 8.2
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 133 bits (321), Expect = 1e-31
Identities = 65/154 (42%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Frame = +1
Query: 85 QLREYEVIGRKLPF-GERAQASLXIK*EFSLRIQLSPNLXFWYFLRQLKKFKKTTGEIVX 261
+ +Y+V+GR LP G+ +K + ++ FWYFLR+LKK KK+ G+++
Sbjct: 5 RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSK--FWYFLRKLKKVKKSNGQMLA 62
Query: 262 XXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYXDMGAXHRARAHS 441
N+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M + HR R
Sbjct: 63 INEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPC 122
Query: 442 IQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 543
IQIIK + C+R KQFHNS I+FPL R
Sbjct: 123 IQIIKTATVHFKLCKRDNTKQFHNSNIKFPLVYR 156
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 130 bits (315), Expect = 6e-31
Identities = 63/153 (41%), Positives = 87/153 (56%)
Frame = +1
Query: 85 QLREYEVIGRKLPFGERAQASLXIK*EFSLRIQLSPNLXFWYFLRQLKKFKKTTGEIVXX 264
+ +Y+V+GR LP + + + ++ FWYFLR+LKK KK+ G+I+
Sbjct: 5 RFHQYQVVGRGLPTPTDEHPKIY-RMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAI 63
Query: 265 XXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYXDMGAXHRARAHSI 444
N+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M + HR R I
Sbjct: 64 NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 123
Query: 445 QIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 543
QIIK + C+R KQFH S I+FPL R
Sbjct: 124 QIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYR 156
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 120 bits (290), Expect = 6e-28
Identities = 54/112 (48%), Positives = 71/112 (63%)
Frame = +1
Query: 208 YFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGA 387
YFLR+LKK KK+ G+++ N+GIWLRY+SR+G HNMY+EYRD ++ GA
Sbjct: 62 YFLRKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 121
Query: 388 VTQCYXDMGAXHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 543
V Q Y +M + HR R IQIIK + C+R KQFHN +I+FPL R
Sbjct: 122 VEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYR 173
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = +3
Query: 441 NTDHQSGSNQGCC----VSPSTGQTVPQQHHQIPIAQT 542
N H G N+G P+ QT P+QH Q+PI T
Sbjct: 406 NNHHHQGGNRGGAHHVGTPPNQQQTKPEQHPQLPIGAT 443
>07_03_0033 +
12656255-12656297,12657402-12657408,12657484-12658016,
12658106-12658224,12658329-12658688,12659602-12659784
Length = 414
Score = 28.7 bits (61), Expect = 3.6
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Frame = +3
Query: 387 CHSVLXRYGSXTQSPSSLNTDHQS---GSNQGCCVSPSTGQTVPQQHHQIPIAQTCAXLQ 557
C VL G QS L + S G N G SP PQ H I+ CA +Q
Sbjct: 338 CQIVLPLPGQQRQSLMKLGSMAGSAGTGVNVGRQRSPQVTAPSPQVHEPPSISPLCAAIQ 397
Query: 558 ET*YLR 575
E Y R
Sbjct: 398 EPKYTR 403
>03_01_0219 +
1731267-1731728,1732148-1732235,1732330-1732417,
1732528-1732573,1732687-1732785,1734363-1734431,
1735706-1736036,1736123-1736256,1736400-1737251
Length = 722
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 426 SPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHH 521
S + L T ++G+N C STGQT P Q H
Sbjct: 561 SATKLATKCENGANVSCDGVGSTGQTPPLQQH 592
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 423 QSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAXLQET 563
Q P S T++Q SN + Q + HHQ+PI + + T
Sbjct: 950 QCPQSTETNYQRCSNGETESNQPVSQNELEDHHQVPITASSSTNNST 996
>11_06_0007 - 19171122-19172036
Length = 304
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 509 WNCLTCGRRHAAALITSTLMICI 441
W C CG R AA L+ +C+
Sbjct: 252 WGCKACGEREAAVLLLPCRHLCL 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,836,460
Number of Sequences: 37544
Number of extensions: 283284
Number of successful extensions: 787
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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