Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_B14
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   156   1e-38
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AC024826-17|AAF60789.1|  662|Caenorhabditis elegans Hypothetical...    27   7.4  
AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  156 bits (378), Expect = 1e-38
 Identities = 77/168 (45%), Positives = 103/168 (61%), Gaps = 1/168 (0%)
 Frame = +1

Query: 73  KAKGQ-LREYEVIGRKLPFGERAQASLXIK*EFSLRIQLSPNLXFWYFLRQLKKFKKTTG 249
           KA G+ L EY V+GRK+P  E+   +   K +      +     FWYF+  L++ KK  G
Sbjct: 4   KALGETLNEYVVVGRKIPT-EKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANG 62

Query: 250 EIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYXDMGAXHRA 429
           EI+              N+G+WL+Y+SR+G HNMYREYRD +V GAVTQCY DMGA HRA
Sbjct: 63  EILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRA 122

Query: 430 RAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHXYKRLNTF 573
           +A  I I+KV+ +KA   +R  +K FH++ IRFPLP RV   K L+ F
Sbjct: 123 QADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVF 170


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +3

Query: 369 PECRWSCHSVLXRYGSXTQSPS-SLNTDHQSGSNQGCCVSPSTGQT--VPQQHHQIPIAQ 539
           P+C  SCHS     G+   S S S NT+     +  C   P   Q   +  Q  QI I Q
Sbjct: 213 PKCTQSCHSQCISQGNPAASCSNSCNTE----CSDKCSTRPVQAQVQQIQPQQVQITIPQ 268

Query: 540 TC 545
           TC
Sbjct: 269 TC 270


>AC024826-17|AAF60789.1|  662|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.14 protein.
          Length = 662

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 390 HSVLXRYGSXTQSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIP 530
           H  L R     Q   + N+D +S +    C  P+   T+   H QIP
Sbjct: 447 HKNLARLKLSQQQNQNQNSDSESDTEMKICPLPNPPLTLAPTHQQIP 493


>AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical
           protein F19B2.6 protein.
          Length = 807

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 414 SXTQSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQT 542
           S +Q  +S N D+ +G  +GCCV     +  P  +H  P AQ+
Sbjct: 385 SDSQQGTSQNRDNLAGM-KGCCVKDQYHEPAPSGYHP-PQAQS 425


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,475,764
Number of Sequences: 27780
Number of extensions: 238492
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)