Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_B10
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    89   7e-19
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    27   1.8  

>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 88.6 bits (210), Expect = 7e-19
 Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 4/166 (2%)
 Frame = +3

Query: 153 QKTHRERHQPEARKHLGLLEXXXXXXXXXXXXHEKGQXXXXXXXXXXDKNPDEFYYHMIN 332
           +K HRER QP  R+  GLLE              K +          ++NPDEFY+ M +
Sbjct: 11  RKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKKLKRLREKALERNPDEFYHEMTH 70

Query: 333 SRVKEGVHHELQKEGEHSSEQVKLMQTQDIKYINMKRTIESRRINRLQSQLHMTDVAEAT 512
            + K GV  E +++     + +K+++TQDI +I   R +E  +I+ L+ Q+H T  A   
Sbjct: 71  KKTKNGVPLEQREDSTIDMDTIKILKTQDIGWIRHHRNVERAKIDHLEQQMH-TVGAHRN 129

Query: 513 PN---THTFFVDE-GEKNGFDLAKRLDTHPALIGRKSNRPRLSDLD 638
            N    HT FVD   E   F+ A+   T   L+GR  NR +   ++
Sbjct: 130 KNESRKHTIFVDNVKEAKSFNPAEFFQTTDDLVGRTENRVKKDQIE 175


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 645 LSCLSQTILAYWIFCQSEQDVCQVSSLNQSHSFHLHQQRMCV 520
           +SC +Q I  ++    S+  V Q+S+  +  SF  H Q MC+
Sbjct: 73  VSCATQDI--FYALSDSQVYVYQISTFKKLFSFGAHCQNMCL 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,401
Number of Sequences: 5004
Number of extensions: 39414
Number of successful extensions: 108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)