Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_B10
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1083 - 34403769-34403774,34403819-34403918,34404235-344043... 92 4e-19
07_03_1131 + 24190675-24190814,24190938-24191021,24191628-241917... 31 0.80
04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667... 31 1.1
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602... 31 1.1
05_07_0063 - 27428056-27428184,27428321-27428460,27428698-274289... 28 5.6
06_03_0901 - 25800317-25800403,25800420-25800674,25800817-258010... 27 9.8
01_06_0270 + 28048449-28048577,28048915-28048978,28049537-280496... 27 9.8
>01_06_1083 - 34403769-34403774,34403819-34403918,34404235-34404318,
34404427-34404506,34404614-34404707,34404796-34404887,
34405335-34405425,34405617-34405719,34405919-34406008,
34406154-34406235,34406434-34406481,34406601-34406897,
34406992-34407078,34408047-34408247,34408329-34408533,
34409362-34410152
Length = 816
Score = 91.9 bits (218), Expect = 4e-19
Identities = 43/133 (32%), Positives = 72/133 (54%)
Frame = +3
Query: 153 QKTHRERHQPEARKHLGLLEXXXXXXXXXXXXHEKGQXXXXXXXXXXDKNPDEFYYHMIN 332
++ H+ER QPE+RK GLLE H+K + +NPDEFY+ MIN
Sbjct: 626 RRAHKERAQPESRKKFGLLEKHKDYIVRAKAFHQKEETIRKLKEKASFRNPDEFYFKMIN 685
Query: 333 SRVKEGVHHELQKEGEHSSEQVKLMQTQDIKYINMKRTIESRRINRLQSQLHMTDVAEAT 512
S+ +G+H + +++ +++ L++T+D+ YI E ++I +L S LH D
Sbjct: 686 SKTVDGIHRPKPEANKYTEDELMLLKTKDMGYILQGIQSEKKKIEKLSSMLHELD--NKR 743
Query: 513 PNTHTFFVDEGEK 551
PN H +F ++ E+
Sbjct: 744 PNKHVYFAEDREE 756
>07_03_1131 +
24190675-24190814,24190938-24191021,24191628-24191735,
24193212-24193266,24193360-24193404
Length = 143
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +3
Query: 387 SEQVKLMQTQDIKYINMKRTIESRRINRLQSQLHMTDVAEATPNTHTFFVDEG 545
+++ K+ Q Q ++++KR IE+ N + S M ++ P+T FVD G
Sbjct: 35 AQRDKVFQQQKT-FLDLKRNIENLEKNGVTSMRSMVNLGSEVPDTRHIFVDIG 86
>04_04_1312 +
32565447-32565585,32566008-32566060,32566139-32566771,
32566844-32566972,32567052-32567144,32567220-32567336,
32567412-32567512,32567603-32567870,32568236-32568265,
32568361-32568572,32568650-32568731,32568804-32569555,
32569640-32569811,32570412-32570498,32570578-32570895,
32570982-32571107
Length = 1103
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 306 DEFYYHMINSRVKEGVHHELQKEGEHSSEQVKLMQTQDIKYI-NMKRTIESRRINRLQSQ 482
+E MI++ +K+GV + K+ +++ +Q DI+YI N K++++ RR N Q Q
Sbjct: 303 EEKVISMIDA-IKKGVKLKDWKDTVFGQQEILEVQANDIEYIENYKQSVKKRRGNEDQDQ 361
>04_04_1311 -
32559549-32559674,32559761-32560078,32560158-32560244,
32560845-32561016,32561101-32561852,32561925-32562006,
32562084-32562295,32562391-32562420,32562786-32563074,
32563143-32563243,32563319-32563435,32563511-32563603,
32563683-32563811,32563884-32564516,32564765-32564844,
32565152-32565164
Length = 1077
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 306 DEFYYHMINSRVKEGVHHELQKEGEHSSEQVKLMQTQDIKYI-NMKRTIESRRINRLQSQ 482
+E MI++ +K+GV + K+ +++ +Q DI+YI N K++++ RR N Q Q
Sbjct: 270 EEKVISMIDA-IKKGVKLKDWKDTVFGQQEILEVQANDIEYIENYKQSVKKRRGNEDQDQ 328
>05_07_0063 -
27428056-27428184,27428321-27428460,27428698-27428926,
27429231-27429281,27429411-27429636,27430230-27430300,
27430466-27430585,27430671-27430865,27431088-27431152,
27431232-27431322,27431607-27431707,27431767-27431817,
27432076-27432177,27432406-27432510,27432600-27432663,
27433023-27433151
Length = 622
Score = 28.3 bits (60), Expect = 5.6
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Frame = +3
Query: 315 YYHMINSRVKEGVHHELQKEGEHSSEQVKLMQTQDIKYINMKRTIESRRINRLQSQLHMT 494
++ + V++G + ++ ++ + T + YINM + S N + +
Sbjct: 503 FFRKLPQDVEKGGNPSHSIFDRYNDSYLRRIGTTVLAYINM---VCSTLRNSIPKSIVYC 559
Query: 495 DVAEATPNT-HTFFVDEGEKNGFDLAKRLDTHPALIGRKSNRPRLSDL 635
V EA + FF + G + L+K LD PA++ R++N + +L
Sbjct: 560 QVREAKRSLLDHFFTELGAREIKQLSKLLDEDPAVMERRTNLAKRLEL 607
>06_03_0901 -
25800317-25800403,25800420-25800674,25800817-25801043,
25801773-25801929,25802977-25803159
Length = 302
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 351 VHHELQKEGEHSSEQVKLMQTQDIKYINMKRTIE 452
+ HE QKE + S++V+ ++ ++Y RT+E
Sbjct: 214 IQHERQKEFDERSQEVQSLKQLVVQYQEQLRTLE 247
>01_06_0270 +
28048449-28048577,28048915-28048978,28049537-28049638,
28049971-28050021,28050075-28050172,28050395-28050485,
28050718-28050782,28050913-28051107,28051207-28051326,
28051592-28051662,28051787-28052012,28052330-28052407,
28052507-28052735,28052958-28053097,28053571-28053699
Length = 595
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +3
Query: 381 HSSEQVKLMQTQDIKYINMKRTIESRRINRLQSQLHMTDVAEATPNT-HTFFVDEGEKNG 557
++ ++ + T + Y+NM + S N + + V EA FF + G +
Sbjct: 498 YNDSYLRRISTNVLAYVNM---VCSSLRNSIPKSIVYCQVREAKRTLLDRFFTELGAREI 554
Query: 558 FDLAKRLDTHPALIGRKSNRPRLSDL 635
++K LD PA++ R++N + +L
Sbjct: 555 KHISKLLDEDPAVMERRANLAKRLEL 580
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,568,213
Number of Sequences: 37544
Number of extensions: 228474
Number of successful extensions: 508
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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