Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_B08
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    35   0.009
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    30   0.27 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   3.3  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.7  
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    25   5.7  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   7.5  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   7.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   10.0 
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    25   10.0 

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 34.7 bits (76), Expect = 0.009
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +1

Query: 385 ELIKSYLFGRIQKVDFKGKRSSGVLLNMGVPQGSILGQFLFLVYINDL 528
           +++K +L G I K+      +S  L  +G+PQGSIL  FL   Y+ DL
Sbjct: 680 KMLKEHLSGHIVKIG-----NSQYLQKVGIPQGSILSSFLCHFYMEDL 722


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 466 MGVPQGSILGQFLFLVYINDLPKFIE 543
           +G PQGSI+   L  +Y++ L +FIE
Sbjct: 419 VGTPQGSIVSPILANIYLHQLDEFIE 444


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -2

Query: 167  IEMVRKLFQNIFFKNFTQCYLQLSKIVLKWVLKLEGSKVLPDLNKSIIL 21
            + ++R  FQ    K    C +  SK+ + W ++L  + V   LN+ + L
Sbjct: 2334 VSILRTKFQTTKHKRSPFCQVTYSKVDIPWSMELHAASVEKVLNEYLEL 2382


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 476 GTPILSKTPEDLFPLKSTFWIL 411
           G+ +L+K P   +P  +TFW L
Sbjct: 855 GSNVLAKEPNTFYPAINTFWPL 876


>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 129 EKNILEQLSNHFNYNNLLHKKIIW 200
           E  +L+Q+  +F+  NL H K +W
Sbjct: 64  EAEVLKQVEFYFSDTNLPHDKFLW 87


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = -2

Query: 197  YYFFMKQVIVIEMVRKLFQNIFFKNFTQCYLQLSKIVLK-WVLKLEGSKVLPDLNK 33
            YY  +K  I ++ +RK     F+K        L  +         EGS V  D NK
Sbjct: 1104 YYMIIKSPIALDAIRKHINGTFYKTLEAMKSDLMTMFNNARTYNEEGSFVYEDANK 1159


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 110 YLQLSKIVLKWVLKLEGSKVLPDLNKSIILLHFIRS 3
           Y+Q S  +     K+ GS  L   NKS++ +H ++S
Sbjct: 294 YMQTSSELTSSTEKMNGSHPLQLSNKSLLSIHLMQS 329


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = -2

Query: 242  RSTLASVVE*PLVNPYYFFMKQVIVIEMVRKLFQNIFFKNFTQCYLQLSKIVLKWVLKLE 63
            RS   S+V  PL +   FFMK V++ + + +L   +  ++      +    V KW   +E
Sbjct: 2813 RSLNESIV--PLYSELEFFMKSVVLNQYIFELAMRLSKESNIAVVEEAKSFVTKWKAYIE 2870


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -3

Query: 496 DPIWNPEEHPY*VRHRKIS 440
           DP+ +PEE PY V++R+IS
Sbjct: 163 DPL-HPEEPPYVVQYREIS 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,297
Number of Sequences: 5004
Number of extensions: 46559
Number of successful extensions: 110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)