Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_B08
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    42   4e-04
01_03_0149 + 13194866-13195012,13196576-13196828,13197810-131981...    29   3.3  

>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 29/115 (25%), Positives = 46/115 (40%)
 Frame = +1

Query: 196 YGFTRGHSTTDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVEHNTLLRKLHHYGIRG 375
           YGF +G +  D      + I Q  +     + +  D  KAFD +EH+ +L  + H G   
Sbjct: 422 YGFIKGKTIQDCPAWPFEYIHQCQQSKREIVLLKLDFEKAFDTIEHSAILSVMQHMGFPL 481

Query: 376 VSLELIKSYLFGRIQKVDFKGKRSSGVLLNMGVPQGSILGQFLFLVYINDLPKFI 540
             +E ++         V   G   +      GV QG  L   LF++    L + I
Sbjct: 482 KWIEWVQMVFSTASSAVLLNGVPGNSFKCRRGVRQGVPLSLLLFVLGAELLQRII 536


>01_03_0149 +
           13194866-13195012,13196576-13196828,13197810-13198173,
           13198283-13198501,13199888-13200002,13200697-13200948,
           13201149-13201442
          Length = 547

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 350 NYTTMVLGAFH*NLLNLIYSEESKR*TLKERDLPV-SYLIWVFLRVPYWVNSYFWCISMI 526
           N T +     + NLL L+Y EE  + TL  ++L V S L +   R+   V  YFW    +
Sbjct: 228 NETILEFAKLNFNLLQLLYCEELNKITLWWKELKVKSNLSFSRDRI---VEMYFWMNGAL 284

Query: 527 YQ 532
           Y+
Sbjct: 285 YE 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,620,887
Number of Sequences: 37544
Number of extensions: 230658
Number of successful extensions: 440
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)