Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_B08
(558 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 56 2e-08
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 50 1e-06
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 45 3e-05
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 41 5e-04
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 41 5e-04
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 41 5e-04
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 39 0.003
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 37 0.009
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 33 0.18
Z35663-1|CAA84725.1| 324|Caenorhabditis elegans Hypothetical pr... 29 3.0
AL110479-7|CAB54355.1| 288|Caenorhabditis elegans Hypothetical ... 28 4.0
Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical pr... 27 6.9
AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassi... 27 6.9
AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative pota... 27 6.9
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +1
Query: 310 KAFDFVEHNTLLRKLHHYGIRGVSLELIKSYLFGRIQKVDFKGKRSSGVL-LNMGVPQGS 486
KAFD V H+ LL+KLH +GI + +L R V + ++ GVP+GS
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61
Query: 487 ILGQFLFLVYINDL 528
+ G FLFL++IN L
Sbjct: 62 VSGPFLFLIFINSL 75
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/83 (33%), Positives = 41/83 (49%)
Frame = +1
Query: 292 VFCDLSKAFDFVEHNTLLRKLHHYGIRGVSLELIKSYLFGRIQKVDFKGKRSSGVLLNMG 471
++ D SKAFD + H+ LL KL L + +L R +V SS G
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76
Query: 472 VPQGSILGQFLFLVYINDLPKFI 540
VPQG++L LF +Y+ND+ +
Sbjct: 77 VPQGAVLSPLLFGIYVNDISSIL 99
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 45.2 bits (102), Expect = 3e-05
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Frame = +1
Query: 196 YGFTRGHSTTDASVDLIKNI---LQA*EESHNALGVFCDLSKAFDFVEHNTLLRKLHH-Y 363
+GF HSTT A + + +I L A+ DL AFD V L L
Sbjct: 437 HGFKPEHSTTTAVIQVTNDIIGGLNMKNPPERAIMACLDLRAAFDKVPTKKLCNDLMEAQ 496
Query: 364 GIRGVSLELIKSYLFGRIQKVDFKGKRSSGVLLNMGVPQGSILGQFLFLVYINDLP 531
GI + +YL R+ + S L GVPQGS++ LF Y+ D+P
Sbjct: 497 GIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMP 552
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 41.1 bits (92), Expect = 5e-04
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = +1
Query: 199 GFTRGHSTTDASVDLIKNILQA*EESHNALG-VFCDLSKAFDFVEHNTLLRKLHHYGIRG 375
GF R ST D + ++ +L+ E L VF D KAFD VEH + + L G G
Sbjct: 487 GFRRSFSTID-HIHSLQRLLEVGREYQIPLTLVFIDFKKAFDTVEHQAIWKSLDEQGADG 545
Query: 376 VSLELIKS-YLFGRIQKVDFKGKRSSGVLLNMGVPQGSILGQFLF 507
++L+K Y F R V + GV QG + LF
Sbjct: 546 AYIDLLKECYKNCTTNFTPF--HRPVAVPVTKGVRQGDPISPNLF 588
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 41.1 bits (92), Expect = 5e-04
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = +1
Query: 199 GFTRGHSTTDASVDLIKNILQA*EESHNALG-VFCDLSKAFDFVEHNTLLRKLHHYGIRG 375
GF R ST D + ++ +L+ E L VF D KAFD VEH + + L G G
Sbjct: 658 GFRRSFSTID-HIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADG 716
Query: 376 VSLELIKS-YLFGRIQKVDFKGKRSSGVLLNMGVPQGSILGQFLF 507
++L+K Y F R V + GV QG + LF
Sbjct: 717 AYIDLLKECYKNCTTNFTPF--HRPVAVPVTKGVRQGDPISPNLF 759
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 41.1 bits (92), Expect = 5e-04
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = +1
Query: 199 GFTRGHSTTDASVDLIKNILQA*EESHNALG-VFCDLSKAFDFVEHNTLLRKLHHYGIRG 375
GF R ST D + ++ +L+ E L VF D KAFD VEH + + L G G
Sbjct: 397 GFRRSFSTID-HIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADG 455
Query: 376 VSLELIKS-YLFGRIQKVDFKGKRSSGVLLNMGVPQGSILGQFLF 507
++L+K Y F R V + GV QG + LF
Sbjct: 456 AYIDLLKECYKNCTTNFTPF--HRPVAVPVTKGVRQGDPISPNLF 498
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +1
Query: 271 ESHNALG-VFCDLSKAFDFVEHNTLLRKLHHYGIRGVSLELIKSYLFGRIQKVDFKGK-R 444
E+H + + LS AFD V H L+ KL+ + + + + + V
Sbjct: 882 EAHKRVDLIHFKLSTAFDKVPHEFLISKLNDFNVHPTLRNWFRKLMSPKTFSVQVNDHLE 941
Query: 445 SSGVLLNMGVPQGSILGQFLFLVYINDL 528
S +G P+GS QF+FLV+IN L
Sbjct: 942 SEKHNCQIGAPRGSESRQFMFLVFINSL 969
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 349 KLHHYGIRGVSLELIKSYLFGRIQKVDF-KGKRSSGVLLNMGVPQGSILGQFLFLVYIND 525
KL +G+ ++ K +L R V K + ++ GVPQGS+ G LF+++IN+
Sbjct: 839 KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINN 898
Query: 526 L 528
L
Sbjct: 899 L 899
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 247 KNILQA*EESHNALGVFCDLSKAFDFVEHNTLLRKLHHYGIRGVSLELIK 396
K+ L++ + + VF D KAFD VEH + + L G ++L+K
Sbjct: 25 KDFLKSAGNTRSLTLVFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLK 74
>Z35663-1|CAA84725.1| 324|Caenorhabditis elegans Hypothetical
protein T04A8.1 protein.
Length = 324
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/68 (20%), Positives = 35/68 (51%)
Frame = -2
Query: 212 PLVNPYYFFMKQVIVIEMVRKLFQNIFFKNFTQCYLQLSKIVLKWVLKLEGSKVLPDLNK 33
P+ +PY FF ++ L ++ FK F+Q ++ +++ + ++ K+ + K
Sbjct: 100 PIASPY-FFTPSILTKMYYAALHYSLGFKTFSQIFMSFNRMTCV-IFLMKHLKLWKQILK 157
Query: 32 SIILLHFI 9
++++ FI
Sbjct: 158 PVLIITFI 165
>AL110479-7|CAB54355.1| 288|Caenorhabditis elegans Hypothetical
protein Y105C5B.9 protein.
Length = 288
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = -1
Query: 327 NKIKSFR*IAEYPKGIMRFLSSLKNIFNKIYTCISS*MTSSESILFFYEAGYCN*NGSKV 148
+KI + +AE+PK + K+ + + + SS+ I FF+E G + +G
Sbjct: 33 SKIVNDMDLAEHPKSVFSTYDEDKHAADSYF------LNSSDKIRFFFEEGAVDKDGELT 86
Query: 147 VPK 139
VPK
Sbjct: 87 VPK 89
>Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical
protein F08B12.3c protein.
Length = 1086
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 458 YLIWVFLRVPYW-VNSYFWCISMIYQSLL 541
YL+WV W + + F CISM+Y L+
Sbjct: 93 YLLWVDFDFKIWFLQTMFACISMVYTILV 121
>Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical
protein F08B12.3b protein.
Length = 1107
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 458 YLIWVFLRVPYW-VNSYFWCISMIYQSLL 541
YL+WV W + + F CISM+Y L+
Sbjct: 114 YLLWVDFDFKIWFLQTMFACISMVYTILV 142
>Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical
protein F08B12.3a protein.
Length = 1119
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 458 YLIWVFLRVPYW-VNSYFWCISMIYQSLL 541
YL+WV W + + F CISM+Y L+
Sbjct: 114 YLLWVDFDFKIWFLQTMFACISMVYTILV 142
>AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassium
channel protein.
Length = 1107
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 458 YLIWVFLRVPYW-VNSYFWCISMIYQSLL 541
YL+WV W + + F CISM+Y L+
Sbjct: 114 YLLWVDFDFKIWFLQTMFACISMVYTILV 142
>AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative
potassium channel Slo-2 protein.
Length = 1119
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 458 YLIWVFLRVPYW-VNSYFWCISMIYQSLL 541
YL+WV W + + F CISM+Y L+
Sbjct: 114 YLLWVDFDFKIWFLQTMFACISMVYTILV 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,018,516
Number of Sequences: 27780
Number of extensions: 239165
Number of successful extensions: 564
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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