Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_B07
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058...    40   7e-04
03_01_0468 - 3612079-3612197,3612679-3612850                           38   0.003
04_03_0358 - 14856490-14856573,14856829-14856874,14857116-148572...    27   5.5  
10_06_0001 - 9366721-9367293                                           27   7.2  
07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698...    27   7.2  
04_04_1090 - 30764340-30764704,30765092-30765204,30765414-307656...    27   7.2  
04_01_0105 + 1098551-1100392                                           27   7.2  

>10_07_0172 +
           13804803-13805293,13805423-13805537,13805766-13805831,
           13805921-13806009,13806103-13806193,13806312-13806458,
           13806575-13806667,13806745-13806846,13806957-13807541,
           13808523-13808813,13808866-13808937
          Length = 713

 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = -3

Query: 269 SQPPSFTFRFKKSEDVSVTDRSFHVPDDLTAGLPNELDLHLSTLXP 132
           +QPP    R ++ EDV++TDR+  VP D T  +  EL   L  L P
Sbjct: 605 AQPPGLPLRLEQGEDVALTDRALDVPHDETVLVVEELHSDLGHLTP 650


>03_01_0468 - 3612079-3612197,3612679-3612850
          Length = 96

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -3

Query: 269 SQPPSFTFRFKKSEDVSVTDRSFHVPDDLTAGLPNELDLHLSTLXP 132
           ++PP      ++ EDV++++R+  VP D T  +  ELD HL  L P
Sbjct: 10  AKPPGLPLGLEQGEDVALSNRALDVPHDETVLVIQELDSHLGHLTP 55


>04_03_0358 -
           14856490-14856573,14856829-14856874,14857116-14857229,
           14857366-14857401,14857822-14857946,14858052-14858117,
           14858295-14858534,14858900-14859001,14859101-14859138,
           14859219-14859321,14859402-14859524,14860666-14860742,
           14860853-14860998,14861077-14861246
          Length = 489

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 139 WXLRTSTAEYFHDTSKNVGFIH---FGL*YRALI 47
           W L T+  EY+HDT  ++   H     + YRALI
Sbjct: 362 WELYTARIEYYHDTGDSMVKYHKKFTAMGYRALI 395


>10_06_0001 - 9366721-9367293
          Length = 190

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 12  ETRQLWCTCVNCINARYYKPKWINPTFL 95
           +T+++ C CV+C N +     WINP+ +
Sbjct: 35  KTKEIRCPCVHCKNQKI----WINPSVI 58


>07_03_1727 +
           29068348-29068571,29069473-29069514,29069593-29069839,
           29069936-29070013,29070551-29070736,29070829-29071126,
           29071775-29072244
          Length = 514

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +3

Query: 21  QLWCTCVNCINARYYKPKWINPTFL-LVS*KYSAVLVLRXQCTQVKVEFI-GETSRQIIR 194
           Q +   V C+N  YY  KWI    L L+    S   ++     + +++ I  E  R  +R
Sbjct: 212 QTYDEAVKCLNTNYYGLKWITEALLPLLKQSPSGARIVNTTSLRSELKRIPNEKLRDELR 271

Query: 195 NV 200
           N+
Sbjct: 272 NI 273


>04_04_1090 -
           30764340-30764704,30765092-30765204,30765414-30765638,
           30766432-30766553,30766617-30767174,30769207-30769477,
           30772175-30773256
          Length = 911

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 92  LARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERE 202
           L  +V VLG    +G    +EG +  G +PS H  R+
Sbjct: 833 LIGLVPVLGCAARRGAARRAEGDIVGGGKPSSHAPRQ 869


>04_01_0105 + 1098551-1100392
          Length = 613

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 83  PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQ 178
           P++LA VV +LGR G     Y+    +  G+Q
Sbjct: 377 PDILACVVDILGRAGRLDEAYAMVTSMETGEQ 408


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,874,736
Number of Sequences: 37544
Number of extensions: 171240
Number of successful extensions: 410
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)