Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_B03
         (311 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944           57   3e-09
02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254     57   3e-09
02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907     57   3e-09
01_05_0120 - 18349131-18349880,18349972-18350259,18350383-18350568     30   0.44 
07_01_1026 - 8865924-8866225,8867051-8867297,8867561-8867587           28   1.8  
07_03_0054 + 12848425-12848593,12850106-12850278                       27   4.1  
01_03_0025 + 11739930-11740493,11740820-11741020,11741143-117412...    26   5.4  
01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524...    26   7.2  
10_08_0262 + 16307003-16308416,16309501-16309595,16309954-163099...    25   9.5  

>06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944
          Length = 51

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 23/28 (82%), Positives = 24/28 (85%)
 Frame = +2

Query: 98  PFLXWVRMRTGNTIRYNAKRRHWRRTKL 181
           P   W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 22  PIPYWIRMRTDNTIRYNAKRRHWRRTKL 49


>02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254
          Length = 51

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 23/28 (82%), Positives = 24/28 (85%)
 Frame = +2

Query: 98  PFLXWVRMRTGNTIRYNAKRRHWRRTKL 181
           P   W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 22  PIPYWIRMRTDNTIRYNAKRRHWRRTKL 49


>02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907
          Length = 51

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 23/28 (82%), Positives = 24/28 (85%)
 Frame = +2

Query: 98  PFLXWVRMRTGNTIRYNAKRRHWRRTKL 181
           P   W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 22  PIPYWIRMRTDNTIRYNAKRRHWRRTKL 49


>01_05_0120 - 18349131-18349880,18349972-18350259,18350383-18350568
          Length = 407

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 54  IIXAQIGQKAETKQTHSSXG*GCAQETLFDITLRGVTGEGQSSSCKLV 197
           +  A   +K+E K   S+ G   A  T+FDIT  G   +G++ S K V
Sbjct: 18  VYGAAYAKKSEAKVA-SAPGLAAAVNTVFDITELGAVADGKTDSTKAV 64


>07_01_1026 - 8865924-8866225,8867051-8867297,8867561-8867587
          Length = 191

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 112 PXEEWVCFVSAFWPICALII 53
           P EEW   V+A WP+ A++I
Sbjct: 164 PEEEWSMVVAAGWPVNAILI 183


>07_03_0054 + 12848425-12848593,12850106-12850278
          Length = 113

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 208 FNTFTSLQLELCPSPVTPLSVISNSVSCA 122
           F T+ S+  +L PSP + L V   S+SC+
Sbjct: 8   FTTYVSIVPDLRPSPRSHLCVNHGSISCS 36


>01_03_0025 +
           11739930-11740493,11740820-11741020,11741143-11741235,
           11741355-11742125
          Length = 542

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 113 VRMRTGNTIRYNAKRRHWRRTKLKL 187
           ++ R    +R +  RRHWRR  L L
Sbjct: 75  IKARNSPLLRVSPFRRHWRRLSLSL 99


>01_06_0916 +
           32950575-32950656,32952061-32952272,32952408-32952448,
           32952916-32952959,32953259-32953561,32954145-32954302,
           32954849-32954965,32955562-32955747,32955872-32956031,
           32956079-32956151,32958613-32958889,32959024-32959099,
           32960653-32960720,32961270-32961361,32961505-32961578,
           32961777-32961820,32962155-32962206,32962585-32962704,
           32962777-32962889,32963023-32963110,32963492-32963577,
           32964172-32964258,32964491-32964594,32964996-32965098,
           32965250-32965345,32965456-32965645,32965777-32965838,
           32966014-32966118,32966782-32966983,32967092-32967300,
           32968510-32968673,32968799-32968850,32968935-32969021,
           32969319-32969441,32969567-32969605,32969606-32969860
          Length = 1447

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 163 VTPLSVISNSVSCAHPYPXEEWV 95
           V P+S ++++VS    +P EEW+
Sbjct: 837 VHPISYVTDTVSTMRLFPPEEWL 859


>10_08_0262 +
           16307003-16308416,16309501-16309595,16309954-16309959,
           16310567-16310671
          Length = 539

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 95  DPFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 187
           DPFL W+R R    ++       W+ T  ++
Sbjct: 309 DPFLEWLRRRECKDLKRTLVHGRWKATTWRM 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,339,100
Number of Sequences: 37544
Number of extensions: 82130
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)