Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_B03
(311 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U57846-1|AAB02265.1| 51|Homo sapiens ribosomal protein L39 pro... 56 3e-08
D79205-1|BAA11465.1| 51|Homo sapiens ribosomal protein L39 pro... 56 3e-08
BC070205-1|AAH70205.1| 51|Homo sapiens ribosomal protein L39 p... 56 3e-08
BC001019-1|AAH01019.1| 51|Homo sapiens ribosomal protein L39 p... 56 3e-08
AB061835-1|BAB79473.1| 51|Homo sapiens ribosomal protein L39 p... 56 3e-08
AB209077-1|BAD92314.1| 70|Homo sapiens ribosomal protein L39 v... 54 7e-08
L05096-1|AAC15859.1| 51|Homo sapiens ribosomal protein L39 pro... 50 2e-06
BC012328-1|AAH12328.1| 51|Homo sapiens ribosomal protein L39-l... 50 2e-06
AF548529-1|AAN52397.1| 51|Homo sapiens ribosomal protein L39-2... 50 2e-06
AB063610-1|BAC19837.1| 51|Homo sapiens ribosomal protein L39-l... 50 2e-06
BX537838-1|CAD97850.1| 1410|Homo sapiens hypothetical protein pr... 27 8.8
BC057773-1|AAH57773.1| 363|Homo sapiens pogo transposable eleme... 27 8.8
AL589764-5|CAI16807.1| 1410|Homo sapiens pogo transposable eleme... 27 8.8
AL589764-4|CAI16808.2| 1357|Homo sapiens pogo transposable eleme... 27 8.8
AL589764-3|CAI16809.1| 1366|Homo sapiens pogo transposable eleme... 27 8.8
AL589764-2|CAI16810.1| 1315|Homo sapiens pogo transposable eleme... 27 8.8
AJ242979-1|CAB45136.1| 788|Homo sapiens KIAA0461/245 protein pr... 27 8.8
AB075477-1|BAE45744.1| 1072|Homo sapiens putative protein produc... 27 8.8
AB037911-1|BAB87117.1| 1063|Homo sapiens Nbla00003 protein. 27 8.8
AB007930-1|BAA32306.1| 1355|Homo sapiens KIAA0461 perotein protein. 27 8.8
>U57846-1|AAB02265.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +2
Query: 98 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 187
P W+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>D79205-1|BAA11465.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +2
Query: 98 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 187
P W+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>BC070205-1|AAH70205.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +2
Query: 98 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 187
P W+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>BC001019-1|AAH01019.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +2
Query: 98 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 187
P W+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>AB061835-1|BAB79473.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +2
Query: 98 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 187
P W+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>AB209077-1|BAD92314.1| 70|Homo sapiens ribosomal protein L39
variant protein.
Length = 70
Score = 54.4 bits (125), Expect = 7e-08
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +2
Query: 98 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 187
P W+RM+TGN IRYN+KRRHW+RTKL L
Sbjct: 41 PIPQWIRMKTGNKIRYNSKRRHWKRTKLGL 70
>L05096-1|AAC15859.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +2
Query: 98 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 187
P W++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>BC012328-1|AAH12328.1| 51|Homo sapiens ribosomal protein L39-like
protein.
Length = 51
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +2
Query: 98 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 187
P W++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>AF548529-1|AAN52397.1| 51|Homo sapiens ribosomal protein L39-2
protein.
Length = 51
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +2
Query: 98 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 187
P W++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>AB063610-1|BAC19837.1| 51|Homo sapiens ribosomal protein L39-like
protein.
Length = 51
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +2
Query: 98 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 187
P W++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>BX537838-1|CAD97850.1| 1410|Homo sapiens hypothetical protein
protein.
Length = 1410
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 156 GVTGEGQSSSCKLVNVLNVI 215
GVTGE + KLVN LN I
Sbjct: 308 GVTGENSNEVAKLVNTLNTI 327
>BC057773-1|AAH57773.1| 363|Homo sapiens pogo transposable element
with ZNF domain protein.
Length = 363
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 156 GVTGEGQSSSCKLVNVLNVI 215
GVTGE + KLVN LN I
Sbjct: 308 GVTGENSNEVAKLVNTLNTI 327
>AL589764-5|CAI16807.1| 1410|Homo sapiens pogo transposable element
with ZNF domain protein.
Length = 1410
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 156 GVTGEGQSSSCKLVNVLNVI 215
GVTGE + KLVN LN I
Sbjct: 308 GVTGENSNEVAKLVNTLNTI 327
>AL589764-4|CAI16808.2| 1357|Homo sapiens pogo transposable element
with ZNF domain protein.
Length = 1357
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 156 GVTGEGQSSSCKLVNVLNVI 215
GVTGE + KLVN LN I
Sbjct: 255 GVTGENSNEVAKLVNTLNTI 274
>AL589764-3|CAI16809.1| 1366|Homo sapiens pogo transposable element
with ZNF domain protein.
Length = 1366
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 156 GVTGEGQSSSCKLVNVLNVI 215
GVTGE + KLVN LN I
Sbjct: 255 GVTGENSNEVAKLVNTLNTI 274
>AL589764-2|CAI16810.1| 1315|Homo sapiens pogo transposable element
with ZNF domain protein.
Length = 1315
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 156 GVTGEGQSSSCKLVNVLNVI 215
GVTGE + KLVN LN I
Sbjct: 213 GVTGENSNEVAKLVNTLNTI 232
>AJ242979-1|CAB45136.1| 788|Homo sapiens KIAA0461/245 protein
protein.
Length = 788
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 156 GVTGEGQSSSCKLVNVLNVI 215
GVTGE + KLVN LN I
Sbjct: 308 GVTGENSNEVAKLVNTLNTI 327
>AB075477-1|BAE45744.1| 1072|Homo sapiens putative protein product
of Nbla00003 protein.
Length = 1072
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 156 GVTGEGQSSSCKLVNVLNVI 215
GVTGE + KLVN LN I
Sbjct: 264 GVTGENSNEVAKLVNTLNTI 283
>AB037911-1|BAB87117.1| 1063|Homo sapiens Nbla00003 protein.
Length = 1063
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 156 GVTGEGQSSSCKLVNVLNVI 215
GVTGE + KLVN LN I
Sbjct: 255 GVTGENSNEVAKLVNTLNTI 274
>AB007930-1|BAA32306.1| 1355|Homo sapiens KIAA0461 perotein protein.
Length = 1355
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 156 GVTGEGQSSSCKLVNVLNVI 215
GVTGE + KLVN LN I
Sbjct: 253 GVTGENSNEVAKLVNTLNTI 272
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,155,476
Number of Sequences: 237096
Number of extensions: 461877
Number of successful extensions: 1006
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1459139350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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