Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_B01
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058...    34   0.048
03_01_0468 - 3612079-3612197,3612679-3612850                           32   0.19 
04_04_1090 - 30764340-30764704,30765092-30765204,30765414-307656...    27   7.2  
04_01_0105 + 1098551-1100392                                           27   7.2  

>10_07_0172 +
           13804803-13805293,13805423-13805537,13805766-13805831,
           13805921-13806009,13806103-13806193,13806312-13806458,
           13806575-13806667,13806745-13806846,13806957-13807541,
           13808523-13808813,13808866-13808937
          Length = 713

 Score = 33.9 bits (74), Expect = 0.048
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -3

Query: 266 SQPPSFTFRFKKSEDVSVTDGSFHVSDDLTAGLPNELDLHLSTLXP 129
           +QPP    R ++ EDV++TD +  V  D T  +  EL   L  L P
Sbjct: 605 AQPPGLPLRLEQGEDVALTDRALDVPHDETVLVVEELHSDLGHLTP 650


>03_01_0468 - 3612079-3612197,3612679-3612850
          Length = 96

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 266 SQPPSFTFRFKKSEDVSVTDGSFHVSDDLTAGLPNELDLHLSTLXP 129
           ++PP      ++ EDV++++ +  V  D T  +  ELD HL  L P
Sbjct: 10  AKPPGLPLGLEQGEDVALSNRALDVPHDETVLVIQELDSHLGHLTP 55


>04_04_1090 -
           30764340-30764704,30765092-30765204,30765414-30765638,
           30766432-30766553,30766617-30767174,30769207-30769477,
           30772175-30773256
          Length = 911

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 89  LARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQKRE 199
           L  +V VLG    +G    +EG +  G +PS H  R+
Sbjct: 833 LIGLVPVLGCAARRGAARRAEGDIVGGGKPSSHAPRQ 869


>04_01_0105 + 1098551-1100392
          Length = 613

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 80  PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQ 175
           P++LA VV +LGR G     Y+    +  G+Q
Sbjct: 377 PDILACVVDILGRAGRLDEAYAMVTSMETGEQ 408


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,796,802
Number of Sequences: 37544
Number of extensions: 166524
Number of successful extensions: 382
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)