Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_B01
(397 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58682-1|AAB07066.1| 69|Homo sapiens ribosomal protein S28 pro... 59 5e-09
L05091-1|AAC15855.1| 69|Homo sapiens ribosomal protein S28 pro... 59 5e-09
CR457055-1|CAG33336.1| 69|Homo sapiens RPS28 protein. 59 5e-09
BC070218-1|AAH70218.1| 69|Homo sapiens ribosomal protein S28 p... 59 5e-09
BC070217-1|AAH70217.1| 69|Homo sapiens ribosomal protein S28 p... 59 5e-09
BC021239-1|AAH21239.1| 69|Homo sapiens ribosomal protein S28 p... 59 5e-09
BC000354-1|AAH00354.1| 69|Homo sapiens ribosomal protein S28 p... 59 5e-09
AB061846-1|BAB79484.1| 69|Homo sapiens ribosomal protein S28 p... 59 5e-09
AK091508-1|BAC03679.1| 239|Homo sapiens protein ( Homo sapiens ... 28 9.7
>U58682-1|AAB07066.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 5e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +3
Query: 135 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 230
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.45
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +2
Query: 77 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 181
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>L05091-1|AAC15855.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 5e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +3
Query: 135 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 230
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.45
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +2
Query: 77 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 181
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>CR457055-1|CAG33336.1| 69|Homo sapiens RPS28 protein.
Length = 69
Score = 59.3 bits (137), Expect = 5e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +3
Query: 135 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 230
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.45
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +2
Query: 77 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 181
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>BC070218-1|AAH70218.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 5e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +3
Query: 135 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 230
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.45
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +2
Query: 77 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 181
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>BC070217-1|AAH70217.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 5e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +3
Query: 135 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 230
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.45
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +2
Query: 77 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 181
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>BC021239-1|AAH21239.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 5e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +3
Query: 135 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 230
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.45
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +2
Query: 77 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 181
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>BC000354-1|AAH00354.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 5e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +3
Query: 135 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 230
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.45
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +2
Query: 77 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 181
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>AB061846-1|BAB79484.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 5e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +3
Query: 135 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 230
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.45
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +2
Query: 77 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 181
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>AK091508-1|BAC03679.1| 239|Homo sapiens protein ( Homo sapiens
cDNA FLJ34189 fis, clone FCBBF3017535. ).
Length = 239
Score = 28.3 bits (60), Expect = 9.7
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 119 TGSQGPVYS-SEGRVHWGDQPSDHQKR 196
TG+QG + S S+GR WGD P+ H+ R
Sbjct: 162 TGTQGDLSSTSQGRHFWGDSPA-HRPR 187
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,980,533
Number of Sequences: 237096
Number of extensions: 864425
Number of successful extensions: 1596
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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