Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_B01
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    54   5e-08
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    31   0.40 
AF040645-9|AAB94972.2|  197|Caenorhabditis elegans Hypothetical ...    30   0.69 
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z83129-7|CAB05644.1|  256|Caenorhabditis elegans Hypothetical pr...    26   8.5  
Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical ...    26   8.5  
AL021508-1|CAA16431.1|  170|Caenorhabditis elegans Hypothetical ...    26   8.5  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 53.6 bits (123), Expect = 5e-08
 Identities = 25/33 (75%), Positives = 29/33 (87%), Gaps = 1/33 (3%)
 Frame = +3

Query: 135 QCTQVKVEFIGE-TSRQIIRNVKGPVRDGDILT 230
           QCTQV+VEFI +  +R IIRNVKGPVR+GDILT
Sbjct: 21  QCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53



 Score = 31.1 bits (67), Expect = 0.30
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +2

Query: 71  MDKPNVLARVVKVLGRTGSQG 133
           MDK   LARV KV+GRTGSQG
Sbjct: 1   MDKLT-LARVTKVIGRTGSQG 20


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 10  ETRQLWCTCAYCIKLDITSQNG*TQRSCSCRES 108
           ETRQ  C CA  ++   + Q    Q SCSC+ S
Sbjct: 22  ETRQASCGCAQSVQPTCSCQQASQQYSCSCQPS 54


>AF040645-9|AAB94972.2|  197|Caenorhabditis elegans Hypothetical
           protein F52C6.3 protein.
          Length = 197

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 172 PAVRSSET*KDPSVTETSSLFLNLNVKLGGCDRLLQHYCIRL 297
           P   S E  +DP   E+S +  NLNVK+    + L H  IR+
Sbjct: 64  PLRESEEVTEDPISVESSEVIGNLNVKVAETQQELHHEGIRI 105


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 144 QVKVEFIGETSRQIIRNVKGP-VRD 215
           Q+ +E++G    Q+IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291


>Z83129-7|CAB05644.1|  256|Caenorhabditis elegans Hypothetical
           protein W06G6.12 protein.
          Length = 256

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 25  WCTCAYCIKLDITSQNG*TQRSCSCRESA 111
           W  CAY +   ++SQ   T  +C+CR  A
Sbjct: 120 WECCAYWVSKRMSSQEHHTCPNCNCRVKA 148


>Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 223 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 300
           ++ FLNL +K   CD LL+ ++C ++R
Sbjct: 74  TNFFLNLMIKPSPCDLLLKTYFCSKIR 100


>AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 223 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 300
           ++ FLNL +K   CD LL+ ++C ++R
Sbjct: 74  TNFFLNLMIKPSPCDLLLKTYFCSKIR 100


>AL021508-1|CAA16431.1|  170|Caenorhabditis elegans Hypothetical
           protein Y70C5B.1 protein.
          Length = 170

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 25  WCTCAYCIKLDITSQNG*TQRSCSCRESA 111
           W  CAY +   ++SQ   T  +C+CR  A
Sbjct: 34  WECCAYWVSKRMSSQEHHTCPNCNCRVKA 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,559,556
Number of Sequences: 27780
Number of extensions: 148544
Number of successful extensions: 351
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)