Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_A09
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   142   1e-35
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   142   1e-35
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   139   8e-35
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    29   0.23 
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    26   1.2  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   2.1  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   2.1  
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    25   3.7  

>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  142 bits (344), Expect = 1e-35
 Identities = 63/91 (69%), Positives = 76/91 (83%)
 Frame = +2

Query: 44  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 223
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 224 NPARGPFHFRAPSKILWKTVRSMIPHKTXRG 316
           NP+RG FHFRAPS+I  K VR M+PHKT RG
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARG 96


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  142 bits (344), Expect = 1e-35
 Identities = 63/91 (69%), Positives = 76/91 (83%)
 Frame = +2

Query: 44  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 223
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 224 NPARGPFHFRAPSKILWKTVRSMIPHKTXRG 316
           NP+RG FHFRAPS+I  K VR M+PHKT RG
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARG 96


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  139 bits (337), Expect = 8e-35
 Identities = 60/91 (65%), Positives = 75/91 (82%)
 Frame = +2

Query: 44  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 223
           K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 224 NPARGPFHFRAPSKILWKTVRSMIPHKTXRG 316
           NP+RG FHFRAPS+I  K VR M+PHKT RG
Sbjct: 66  NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRG 96


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 28.7 bits (61), Expect = 0.23
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 71  HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 175
           H L  + AV  K++  G K VV+RC+ I  + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -3

Query: 154 DLFAANHNNFVPFEKDLGDDCRQTAQQMTTAIDHYGLIAKARHFHN 17
           D+ A N       +  L    RQ  QQM T   +YGL+ KAR   N
Sbjct: 126 DVNAKNELTLKALKNQLSVSLRQHEQQMETLKGNYGLV-KARKGRN 170


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 179  NKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRSMI 295
            N+ + MS   KRC     RG  HF    + L+  ++ ++
Sbjct: 1323 NRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLL 1361


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 255 ALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEILICSQRTTTTLFPSRRTLAMTA 91
           AL+  G      ++L+R+ND +    +KK+ + LI  ++  T     R  L  T+
Sbjct: 304 ALRLIGKGTFGQVYLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTS 358


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 237 PRAGFTLHLLRRNDISLSLFLKKLP 163
           P  G   H+LR +   LS +LKK P
Sbjct: 219 PNLGIFTHILRNSRNDLSNYLKKRP 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,304,328
Number of Sequences: 5004
Number of extensions: 23494
Number of successful extensions: 54
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)