Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_P23
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   159   3e-40
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   159   3e-40
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   3.8  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    26   5.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   6.7  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   8.9  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  159 bits (386), Expect = 3e-40
 Identities = 73/118 (61%), Positives = 82/118 (69%)
 Frame = +2

Query: 137 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 316
           DLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGN
Sbjct: 35  DLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGN 94

Query: 317 MCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPL 490
           MCR GRMFAPTK WR+WH                          ARGH IE+IPE+PL
Sbjct: 95  MCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPL 152



 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 33/70 (47%), Positives = 43/70 (61%)
 Frame = +3

Query: 414 PLLLLASQRSFRLEDTLLKRFPSFPWVVADKVQEINKXKQAVIFLXRLKAWSDILKVYKS 593
           P LLLA  R  R+E+      P  P VV D VQ   K K+AV  L  +KA+ D++KV  S
Sbjct: 134 PSLLLA--RGHRIEE-----IPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANS 186

Query: 594 QRLRAGKGKM 623
           ++LRAGKGK+
Sbjct: 187 RKLRAGKGKL 196


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  159 bits (386), Expect = 3e-40
 Identities = 73/118 (61%), Positives = 82/118 (69%)
 Frame = +2

Query: 137 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 316
           DLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGN
Sbjct: 35  DLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGN 94

Query: 317 MCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPL 490
           MCR GRMFAPTK WR+WH                          ARGH IE+IPE+PL
Sbjct: 95  MCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPL 152



 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 33/70 (47%), Positives = 43/70 (61%)
 Frame = +3

Query: 414 PLLLLASQRSFRLEDTLLKRFPSFPWVVADKVQEINKXKQAVIFLXRLKAWSDILKVYKS 593
           P LLLA  R  R+E+      P  P VV D VQ   K K+AV  L  +KA+ D++KV  S
Sbjct: 134 PSLLLA--RGHRIEE-----IPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANS 186

Query: 594 QRLRAGKGKM 623
           ++LRAGKGK+
Sbjct: 187 RKLRAGKGKL 196


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = -2

Query: 502 SATTQGKLGNLFNNVSSSLNERWDASSS 419
           SAT+  +L ++F+N+SSS++   DASS+
Sbjct: 670 SATSNSQLSSIFSNLSSSIS---DASSN 694


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +3

Query: 438 RSFRLEDTLLKRFPSFPWVVADKVQEINKXKQAVIFLXRLKAWSDILKVYKSQRLR 605
           R+F L DT+L+      W +A +V+ + + +     +   + W  ++K    Q  R
Sbjct: 443 RNFELADTILQNTFLTKWRLAVRVKVVQEKRNKDRLIVTFRFWYYLMKAKSFQHKR 498


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 465  LKRFPSFPWVVAD 503
            L ++P FPWV+AD
Sbjct: 1947 LTQYPVFPWVIAD 1959


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 544 KMTACLXLLISWTLSATTQGKLGNLFNNVSS 452
           K+T+ L    SWT S++ Q    NL ++ SS
Sbjct: 232 KLTSSLKKFYSWTSSSSLQHTRENLHDSTSS 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,979
Number of Sequences: 5004
Number of extensions: 40455
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)