Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_P19
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 131 8e-32
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 130 1e-31
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 29 0.60
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 27 2.4
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 3.2
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 4.2
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 5.6
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 5.6
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 5.6
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 7.3
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 9.7
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 131 bits (316), Expect = 8e-32
Identities = 69/133 (51%), Positives = 85/133 (63%)
Frame = +1
Query: 151 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 330
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV +DA
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDA 106
Query: 331 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQF 510
PFR WYE+HY + +G KG K T +S+ RK+ AR +KV+ AL QF
Sbjct: 107 APFRVWYETHYGILMG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVDSALETQF 160
Query: 511 HTGAFAGLRGESP 549
G + P
Sbjct: 161 AAGRLYAVVSSRP 173
Score = 47.6 bits (108), Expect = 1e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3
Query: 60 KRAPIRKKRKYELGRPAANTRLGPQRIH 143
KRA RKKRK+ELGR +NTR+GP+RIH
Sbjct: 17 KRAQYRKKRKFELGRQPSNTRIGPKRIH 44
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 11 MGISRDHWHKRRATG 55
MGI+RD HKR ATG
Sbjct: 1 MGITRDSRHKRSATG 15
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 130 bits (314), Expect = 1e-31
Identities = 69/133 (51%), Positives = 85/133 (63%)
Frame = +1
Query: 151 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 330
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV +DA
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDA 106
Query: 331 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQF 510
PFR WYE+HY + +G KG K T +S+ RK+ AR +KV+ AL QF
Sbjct: 107 APFRVWYETHYGILMG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVDSALETQF 160
Query: 511 HTGAFAGLRGESP 549
G + P
Sbjct: 161 AAGRLYAVVSSRP 173
Score = 47.6 bits (108), Expect = 1e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3
Query: 60 KRAPIRKKRKYELGRPAANTRLGPQRIH 143
KRA RKKRK+ELGR +NTR+GP+RIH
Sbjct: 17 KRAQYRKKRKFELGRQPSNTRIGPKRIH 44
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 11 MGISRDHWHKRRATG 55
MGI+RD HKR ATG
Sbjct: 1 MGITRDSRHKRSATG 15
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 28.7 bits (61), Expect = 0.60
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +1
Query: 133 SVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNA 312
+V +P +R T R+L +G S S ++ +TR V +AS+N L+ + ++
Sbjct: 534 TVISPQPTRRSRTPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLISIISSKPSS 590
Query: 313 IVVVDATPFRQWYE 354
V TPF +E
Sbjct: 591 STVQRQTPFHSPFE 604
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.6 bits (56), Expect = 2.4
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +1
Query: 124 SVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLV 303
SVL +S S+ + KYR + T WG E I+ + + E T L+
Sbjct: 128 SVLGMSYSNTSKHESLKYRLQGVTTDPSLWGHEYVRHLASEIEEEFASRQEEEAPTDDLM 187
Query: 304 KNAIVVV 324
+ A+ +V
Sbjct: 188 ELALTIV 194
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 211 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 384
WGS+ +K + +V+ +++ + +T L AT F + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309
Query: 385 K 387
+
Sbjct: 310 Q 310
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 350 YHCLNGVASTTTIAFLTRVFVRTNS 276
++C N V S T + + VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 272 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 186
L+ + T S +V R H DP KLP RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -1
Query: 196 CPDAAHGT*YF--HHVNEXEWIR*GPSLVFAAGRPNSYFLFLRMGARFP 56
CPD + G Y V + ++R PS+++A ++ LF+R+ ++P
Sbjct: 307 CPDPSQGFNYCIREAVFQGYFVRPLPSIIWALFEFSAVALFIRLKMKYP 355
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.4 bits (53), Expect = 5.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +1
Query: 49 HRXGNVR--PYARRGSMS*GVP--LQTPGSVLSVSTPXRSRGGNTKY 177
+R GN PY R ++ +P L G +LSV SRG TKY
Sbjct: 1165 NREGNFLDVPYNTRNFITFSIPRLLYEQGGILSVPGLNTSRGFETKY 1211
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 169 TKYRALRLDTGNFSWGSECSTRKTRI 246
T YRA+ LDTG+ E + K RI
Sbjct: 1133 TVYRAVNLDTGDLMAVKEVALHKPRI 1158
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 294 DPCQECNCCSRCNSIQAVV 350
D C++ CS+C+++Q VV
Sbjct: 145 DHCKKMRRCSKCDAMQGVV 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,165,506
Number of Sequences: 5004
Number of extensions: 40594
Number of successful extensions: 112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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