Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_P19
(550 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 202 8e-52
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 202 8e-52
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 202 8e-52
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 202 8e-52
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 154 2e-37
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 44 3e-04
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 30 4.6
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 30 4.6
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 30 4.6
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 30 4.6
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 202 bits (492), Expect = 8e-52
Identities = 100/155 (64%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Frame = +1
Query: 58 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTR 234
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 235 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 414
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 415 AIINKKRSQKTARKYLARQRLAKVEGALXEQFHTG 519
I+NKKRS+K +KY R++ AK+ L EQF G
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 56.4 bits (130), Expect = 6e-08
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +3
Query: 57 GKRAPIRKKRKYELGRPAANTRLGPQRIHS 146
GKR P KKRKYELGRPAANT++GP+RIH+
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT 45
Score = 34.3 bits (75), Expect = 0.29
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2
Query: 11 MGISRDHWHKRRATG 55
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 202 bits (492), Expect = 8e-52
Identities = 100/155 (64%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Frame = +1
Query: 58 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTR 234
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 235 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 414
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 415 AIINKKRSQKTARKYLARQRLAKVEGALXEQFHTG 519
I+NKKRS+K +KY R++ AK+ L EQF G
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 56.4 bits (130), Expect = 6e-08
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +3
Query: 57 GKRAPIRKKRKYELGRPAANTRLGPQRIHS 146
GKR P KKRKYELGRPAANT++GP+RIH+
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT 45
Score = 34.3 bits (75), Expect = 0.29
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2
Query: 11 MGISRDHWHKRRATG 55
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 202 bits (492), Expect = 8e-52
Identities = 100/155 (64%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Frame = +1
Query: 58 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTR 234
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 235 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 414
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 415 AIINKKRSQKTARKYLARQRLAKVEGALXEQFHTG 519
I+NKKRS+K +KY R++ AK+ L EQF G
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 56.4 bits (130), Expect = 6e-08
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +3
Query: 57 GKRAPIRKKRKYELGRPAANTRLGPQRIHS 146
GKR P KKRKYELGRPAANT++GP+RIH+
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT 45
Score = 34.3 bits (75), Expect = 0.29
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2
Query: 11 MGISRDHWHKRRATG 55
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 202 bits (492), Expect = 8e-52
Identities = 100/155 (64%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Frame = +1
Query: 58 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTR 234
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 235 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 414
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 415 AIINKKRSQKTARKYLARQRLAKVEGALXEQFHTG 519
I+NKKRS+K +KY R++ AK+ L EQF G
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 56.4 bits (130), Expect = 6e-08
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +3
Query: 57 GKRAPIRKKRKYELGRPAANTRLGPQRIHS 146
GKR P KKRKYELGRPAANT++GP+RIH+
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT 45
Score = 34.3 bits (75), Expect = 0.29
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2
Query: 11 MGISRDHWHKRRATG 55
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 154 bits (374), Expect = 2e-37
Identities = 78/118 (66%), Positives = 89/118 (75%)
Frame = +1
Query: 166 NTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 345
NTK R+ T G C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQ
Sbjct: 35 NTKIGPRRIHTVRVRGG--C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQ 91
Query: 346 WYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTG 519
WYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L EQF G
Sbjct: 92 WYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 149
Score = 56.4 bits (130), Expect = 6e-08
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +3
Query: 57 GKRAPIRKKRKYELGRPAANTRLGPQRIHS 146
GKR P KKRKYELGRPAANT++GP+RIH+
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT 45
Score = 34.3 bits (75), Expect = 0.29
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2
Query: 11 MGISRDHWHKRRATG 55
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 44.4 bits (100), Expect = 3e-04
Identities = 21/41 (51%), Positives = 27/41 (65%)
Frame = +1
Query: 397 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTG 519
LT EE I+NKKRS+K +KY R++ AK+ L EQF G
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 41
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 30.3 bits (65), Expect = 4.6
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 376 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALXEQ 507
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 30.3 bits (65), Expect = 4.6
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 376 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALXEQ 507
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 30.3 bits (65), Expect = 4.6
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 376 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALXEQ 507
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 30.3 bits (65), Expect = 4.6
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 376 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALXEQ 507
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,030,856
Number of Sequences: 237096
Number of extensions: 1699369
Number of successful extensions: 3861
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3861
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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