Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_P19
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   190   6e-49
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    31   0.41 
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.41 
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.41 
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.41 
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    31   0.41 
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    31   0.41 
U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical pr...    29   2.9  
L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin fam...    28   5.1  
AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical ...    28   5.1  
U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein...    27   6.7  
U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein...    27   6.7  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  190 bits (463), Expect = 6e-49
 Identities = 88/133 (66%), Positives = 103/133 (77%)
 Frame = +1

Query: 151 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 330
           R+RGGN KYRALRLD+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA
Sbjct: 47  RTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDA 106

Query: 331 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQF 510
            PFRQWYE+HY LPL RKK AKL+E + AI+NKKRS  T +KY  RQ+ A V+  L EQF
Sbjct: 107 APFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQF 166

Query: 511 HTGAFAGLRGESP 549
           +TG        SP
Sbjct: 167 NTGRLLARISSSP 179



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +3

Query: 57  GKRAPI-RKKRKYELGRPAANTRLGPQRI 140
           G   P+  KKRK+ELGRPAANT++G  R+
Sbjct: 15  GATQPVPHKKRKFELGRPAANTKIGAHRV 43



 Score = 30.7 bits (66), Expect = 0.72
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +2

Query: 11 MGISRDHWHKRRATG 55
          MGISRD WHKR  TG
Sbjct: 1  MGISRDSWHKRYKTG 15


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 181 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 285
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 181 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 285
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 181 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 285
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 181 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 285
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 181 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 285
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 181 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 285
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical
           protein C37H5.5 protein.
          Length = 778

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +1

Query: 379 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXE 504
           +K G     A++  I K+++ KTA+KY  +++LA++E  L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463


>L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin family
           protein 1 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -3

Query: 284 TNSLLDALYTTSMIRVLRV 228
           TNSL+DA+YTT+ +  L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151


>AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical
           protein Y116A8A.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 223 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 345
           CS +    I   ++A+NN ++  KT   N I     TPF Q
Sbjct: 51  CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91


>U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein
           1.0, isoform b protein.
          Length = 154

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 412 EAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGAFAGLRGES 546
           + +  K  +++ A+KY+  ++  KVE    E  H   +A  RG S
Sbjct: 31  QPVYKKFETEEEAQKYVDDRKPKKVESTFPESTHDTYYAVARGHS 75


>U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein
           1.0, isoform a protein.
          Length = 155

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 412 EAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGAFAGLRGES 546
           + +  K  +++ A+KY+  ++  KVE    E  H   +A  RG S
Sbjct: 31  QPVYKKFETEEEAQKYVDDRKPKKVESTFPESTHDTYYAVARGHS 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,313,286
Number of Sequences: 27780
Number of extensions: 241853
Number of successful extensions: 729
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)