Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_P10
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   182   2e-47
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    29   0.53 
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    28   0.92 
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   2.8  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.7  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   6.5  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   8.6  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  182 bits (444), Expect = 2e-47
 Identities = 86/115 (74%), Positives = 101/115 (87%)
 Frame = +1

Query: 127 QAKTSRNPRQRSPXIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILR 306
           Q    +  +Q    +HRIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGPVR+PTKIL+
Sbjct: 3   QVAKDQKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILK 62

Query: 307 ITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 471
           ITTRKTP GEGSKTW+ ++MRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIA
Sbjct: 63  ITTRKTPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +1

Query: 259 KLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 411
           K+ +KGP  +P K+   T  ++P    S + + F+   H R+I L+S + +
Sbjct: 92  KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +2

Query: 23  LKREVSPXSALNNF*LKSCLSRPEFNKQHGSRCSVRQRHRE-TPGRGLPXFTASGSLLLL 199
           +K+  S  SAL     K  L  PE+      R +VR+RH++ +P  G   F AS  ++L 
Sbjct: 57  VKKYYSDLSALER--QKHMLENPEYKYTPKKRSTVRRRHKKVSPSSG--SFVASDYVVLQ 112

Query: 200 AMCAHSRRSVLT*SMEPRN 256
            +   S+    T   +P N
Sbjct: 113 QIAQSSKTLKQTEPEKPVN 131


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +1

Query: 259 KLRVKGPVRMPTKI---LRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITS 429
           K R  G +  P  +   LR    KT  G G    +    ++  R+ DLH   E   +I +
Sbjct: 785 KSRENGTIPRPLYVISHLRPLLHKTSLGVGDILLE-VNGKMITRLSDLHE-FETESEIKA 842

Query: 430 INIEPGVEVEVTI 468
           + +  G+E+E+TI
Sbjct: 843 VILRDGIEMEITI 855


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 364 MRIHKRVIDLHSPSEIVKQITSINIEPGV 450
           +R+H+R I L + S+ ++   + NIE G+
Sbjct: 406 LRVHERAIKLRTLSDSIRADVAENIEMGI 434


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 270  KGPSPHANQDPAYHHP*NSLW*RFKDLGSFSDANPQESD 386
            K P+ +ANQ P   +  N+ W +    G FS+ N    D
Sbjct: 916  KTPAWNANQTPMVANGTNTSWGQTPAYGGFSETNWDTED 954


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 316 RKTPCGEGSKTWDRFQM 366
           R +P   GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,907
Number of Sequences: 5004
Number of extensions: 39947
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)