Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_P10
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 170 6e-43
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 169 8e-43
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 169 1e-42
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 50 8e-07
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 33 0.13
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 29 2.8
10_01_0357 - 3928646-3928954 28 5.0
01_05_0426 + 22042215-22042595,22044846-22045688 27 6.5
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 170 bits (413), Expect = 6e-43
Identities = 78/106 (73%), Positives = 94/106 (88%)
Frame = +1
Query: 157 RSPXIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGE 336
R ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKGPVR+PTK+L ITTRK+PCGE
Sbjct: 24 RELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIPTKVLHITTRKSPCGE 83
Query: 337 GSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 474
G+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPGVEVEVTIAD
Sbjct: 84 GTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIAD 129
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 169 bits (412), Expect = 8e-43
Identities = 77/102 (75%), Positives = 93/102 (91%)
Frame = +1
Query: 169 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 348
++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKGPVR+PTK+L ITTRK+PCGEG+ T
Sbjct: 25 LNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNT 84
Query: 349 WDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 474
WDRF+ RIHKRVIDL S ++VKQITSI IEPGVEVEVTIAD
Sbjct: 85 WDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIAD 126
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 169 bits (411), Expect = 1e-42
Identities = 75/101 (74%), Positives = 92/101 (91%)
Frame = +1
Query: 172 HRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 351
HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMPTK+L ITTRK+PCGEG+ TW
Sbjct: 27 HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTW 86
Query: 352 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 474
DRF+MR+HKRVIDL S +++VKQITSI IEPGVEVEVTI+D
Sbjct: 87 DRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 50.4 bits (115), Expect = 8e-07
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +1
Query: 175 RIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWD 354
+IRI L S V +E C +I AK + GPV +PTK +P +
Sbjct: 334 KIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHKDSRF- 392
Query: 355 RFQMRIHKRVIDLHSP-SEIVKQITSINIEPGVEVEVTI 468
F++R H+R+ID+ P ++ + + + + GV+VEV +
Sbjct: 393 HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 431
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 33.1 bits (72), Expect = 0.13
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +3
Query: 66 D*KVVYLGRNSTSNMAAAVVSGKD---IEKPQAEVSPYSPHQDHSYFSQ-CALTREGLC* 233
D +V TS +A V +G++ ++K + + + + S +++ C L EGL
Sbjct: 105 DWEVALASTTMTSLVAVLVATGEEGSNLKKAKCQHNAADHERQRSLWARVCRLAAEGLVT 164
Query: 234 PNQWSQETEAACKGPSP 284
++W++ A +GPSP
Sbjct: 165 ASKWARPGRAGTRGPSP 181
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +3
Query: 177 HQDHSYFSQCALTREGLC*PNQWSQETEAACKG--PSPH---ANQDPA 305
H S +CAL R+G +W ET C G P+P +QDPA
Sbjct: 11 HHLQSTLFECALLRDGRAESFEWLFETFKNCMGNCPTPRCILTDQDPA 58
>10_01_0357 - 3928646-3928954
Length = 102
Score = 27.9 bits (59), Expect = 5.0
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = -2
Query: 189 SDPDAVNXGRPLPGVSRCLCLTLQRLPCCLLNSGRDKQLFNQKLFSAEXGETSRF 25
S+P A + RPL V+ C LTL R+ C LL G N + +AE RF
Sbjct: 35 SNPTARSIPRPLFLVAGCGLLTLARV-CLLLLQGSPASRGNGRRSAAEDRFAPRF 88
>01_05_0426 + 22042215-22042595,22044846-22045688
Length = 407
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +3
Query: 183 DHSYFSQCALTREGLC*PNQWSQETEAACKGPSPHANQDPAYH 311
DH A TR G+ E P PH PAYH
Sbjct: 13 DHGVRQVWADTRHGIAGGEHERVHAETFALAPQPHKQHRPAYH 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,748,408
Number of Sequences: 37544
Number of extensions: 292561
Number of successful extensions: 745
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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