Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_P09
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...   100   2e-22
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...    42   1e-04
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    37   0.003
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    31   0.14 
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    27   2.3  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    26   5.4  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   5.4  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    25   9.5  

>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score =  100 bits (239), Expect = 2e-22
 Identities = 47/85 (55%), Positives = 58/85 (68%)
 Frame = +1

Query: 133 VKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXX 312
           V EPLDL+RLSLDE +YVK+R +REL G+LHAYD+HLNMVLGDA                
Sbjct: 7   VAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDK 66

Query: 313 XXRTTKRTIPMLFVRGDGVILVSPP 387
             +T ++   MLFVRGD VIL++PP
Sbjct: 67  ALKTIRKHYEMLFVRGDSVILIAPP 91


>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +1

Query: 142 PLDLIRLSLD--ERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 315
           PL +++ ++   +++ +  RN ++L  ++ A+D+H NMVL +                  
Sbjct: 29  PLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASGKKGK 88

Query: 316 XRTTKRTIPMLFVRGDGVILV 378
                R I  +F+RGDGV+LV
Sbjct: 89  AINKDRFISKMFLRGDGVVLV 109


>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = +1

Query: 142 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 261
           PL+LI   +   ++V M++ERE  G L  +D ++N+VL D
Sbjct: 7   PLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKD 46


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 130 PVKEP-LDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 261
           P KE  LDL R   D+RI       R++ G L  +DQ +N+VL D
Sbjct: 20  PRKESILDLSRYQ-DQRIQATFTGGRQITGILKGFDQLMNLVLDD 63


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 190 MRNERELRGKLHAYDQHLNMVL 255
           ++NE+ELR KL AY  + N V+
Sbjct: 735 LQNEKELRSKLEAYHINCNKVI 756


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 31  NLKIATTLTRHKTSYFHNNI*KW 99
           NLK+ +T+ ++ ++Y HN+   W
Sbjct: 205 NLKVVSTVAKYNSAYIHNSKKFW 227


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 282 GCYSFFGIS*YHIQMLIIGMQFASELS 202
           GC +F+ IS  H+Q+L++     + LS
Sbjct: 393 GCRTFYHISLSHLQILVLSRNHLTSLS 419


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 489 ESKTEDKNFITNKDGLLVKVLLYLNDI 409
           E ++E    +  +  LL KVLLYL D+
Sbjct: 382 ERRSESVELLKRESFLLKKVLLYLRDV 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,240
Number of Sequences: 5004
Number of extensions: 31712
Number of successful extensions: 74
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)