Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_P09
         (650 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457185-1|CAG33466.1|  102|Homo sapiens LSM3 protein.                127   4e-29
BC007055-1|AAH07055.1|  102|Homo sapiens LSM3 homolog, U6 small ...   127   4e-29
AJ238095-1|CAB45866.1|  102|Homo sapiens Lsm3 protein protein.        127   4e-29
AF182418-1|AAG14954.1|  102|Homo sapiens MDS017 protein.              127   4e-29
AF182289-1|AAD56227.1|  102|Homo sapiens U6 snRNA-associated Sm-...   127   4e-29
U15008-1|AAC13776.1|  118|Homo sapiens Sm D2 protein.                  40   0.006
BC001930-1|AAH01930.1|  118|Homo sapiens small nuclear ribonucle...    40   0.006
BC000486-1|AAH00486.1|  118|Homo sapiens small nuclear ribonucle...    40   0.006
AC007191-2|AAD22673.1|  118|Homo sapiens SMD2_HUMAN protein.           40   0.006
BC005938-1|AAH05938.1|   91|Homo sapiens LSM5 homolog, U6 small ...    37   0.054
AJ238097-1|CAB45868.1|   91|Homo sapiens Lsm5 protein protein.         37   0.054
AF182291-1|AAD56229.1|   91|Homo sapiens U6 snRNA-associated Sm-...    37   0.054

>CR457185-1|CAG33466.1|  102|Homo sapiens LSM3 protein.
          Length = 102

 Score =  127 bits (306), Expect = 4e-29
 Identities = 59/88 (67%), Positives = 68/88 (77%)
 Frame = +1

Query: 133 VKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXX 312
           V+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHLNM+LGD                 
Sbjct: 14  VEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEE 73

Query: 313 XXRTTKRTIPMLFVRGDGVILVSPPVRV 396
             ++TKR IPMLFVRGDGV+LV+PP+RV
Sbjct: 74  IYKSTKRNIPMLFVRGDGVVLVAPPLRV 101


>BC007055-1|AAH07055.1|  102|Homo sapiens LSM3 homolog, U6 small
           nuclear RNA associated (S. cerevisiae) protein.
          Length = 102

 Score =  127 bits (306), Expect = 4e-29
 Identities = 59/88 (67%), Positives = 68/88 (77%)
 Frame = +1

Query: 133 VKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXX 312
           V+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHLNM+LGD                 
Sbjct: 14  VEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEE 73

Query: 313 XXRTTKRTIPMLFVRGDGVILVSPPVRV 396
             ++TKR IPMLFVRGDGV+LV+PP+RV
Sbjct: 74  IYKSTKRNIPMLFVRGDGVVLVAPPLRV 101


>AJ238095-1|CAB45866.1|  102|Homo sapiens Lsm3 protein protein.
          Length = 102

 Score =  127 bits (306), Expect = 4e-29
 Identities = 59/88 (67%), Positives = 68/88 (77%)
 Frame = +1

Query: 133 VKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXX 312
           V+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHLNM+LGD                 
Sbjct: 14  VEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEE 73

Query: 313 XXRTTKRTIPMLFVRGDGVILVSPPVRV 396
             ++TKR IPMLFVRGDGV+LV+PP+RV
Sbjct: 74  IYKSTKRNIPMLFVRGDGVVLVAPPLRV 101


>AF182418-1|AAG14954.1|  102|Homo sapiens MDS017 protein.
          Length = 102

 Score =  127 bits (306), Expect = 4e-29
 Identities = 59/88 (67%), Positives = 68/88 (77%)
 Frame = +1

Query: 133 VKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXX 312
           V+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHLNM+LGD                 
Sbjct: 14  VEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEE 73

Query: 313 XXRTTKRTIPMLFVRGDGVILVSPPVRV 396
             ++TKR IPMLFVRGDGV+LV+PP+RV
Sbjct: 74  IYKSTKRNIPMLFVRGDGVVLVAPPLRV 101


>AF182289-1|AAD56227.1|  102|Homo sapiens U6 snRNA-associated
           Sm-like protein LSm3 protein.
          Length = 102

 Score =  127 bits (306), Expect = 4e-29
 Identities = 59/88 (67%), Positives = 68/88 (77%)
 Frame = +1

Query: 133 VKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXX 312
           V+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHLNM+LGD                 
Sbjct: 14  VEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEE 73

Query: 313 XXRTTKRTIPMLFVRGDGVILVSPPVRV 396
             ++TKR IPMLFVRGDGV+LV+PP+RV
Sbjct: 74  IYKSTKRNIPMLFVRGDGVVLVAPPLRV 101


>U15008-1|AAC13776.1|  118|Homo sapiens Sm D2 protein.
          Length = 118

 Score = 40.3 bits (90), Expect = 0.006
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
 Frame = +1

Query: 142 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 315
           PL ++  S+  + ++ +  RN ++L G++ A+D+H NMVL +                  
Sbjct: 28  PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87

Query: 316 XRTTK-RTIPMLFVRGDGVILV 378
               K R I  +F+RGD VI+V
Sbjct: 88  KPVNKDRYISKMFLRGDSVIVV 109


>BC001930-1|AAH01930.1|  118|Homo sapiens small nuclear
           ribonucleoprotein D2 polypeptide 16.5kDa protein.
          Length = 118

 Score = 40.3 bits (90), Expect = 0.006
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
 Frame = +1

Query: 142 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 315
           PL ++  S+  + ++ +  RN ++L G++ A+D+H NMVL +                  
Sbjct: 28  PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87

Query: 316 XRTTK-RTIPMLFVRGDGVILV 378
               K R I  +F+RGD VI+V
Sbjct: 88  KPVNKDRYISKMFLRGDSVIVV 109


>BC000486-1|AAH00486.1|  118|Homo sapiens small nuclear
           ribonucleoprotein D2 polypeptide 16.5kDa protein.
          Length = 118

 Score = 40.3 bits (90), Expect = 0.006
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
 Frame = +1

Query: 142 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 315
           PL ++  S+  + ++ +  RN ++L G++ A+D+H NMVL +                  
Sbjct: 28  PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87

Query: 316 XRTTK-RTIPMLFVRGDGVILV 378
               K R I  +F+RGD VI+V
Sbjct: 88  KPVNKDRYISKMFLRGDSVIVV 109


>AC007191-2|AAD22673.1|  118|Homo sapiens SMD2_HUMAN protein.
          Length = 118

 Score = 40.3 bits (90), Expect = 0.006
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
 Frame = +1

Query: 142 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 315
           PL ++  S+  + ++ +  RN ++L G++ A+D+H NMVL +                  
Sbjct: 28  PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87

Query: 316 XRTTK-RTIPMLFVRGDGVILV 378
               K R I  +F+RGD VI+V
Sbjct: 88  KPVNKDRYISKMFLRGDSVIVV 109


>BC005938-1|AAH05938.1|   91|Homo sapiens LSM5 homolog, U6 small
           nuclear RNA associated (S. cerevisiae) protein.
          Length = 91

 Score = 37.1 bits (82), Expect = 0.054
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = +1

Query: 142 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 261
           PL+L+   +  RI++ M++++E+ G L  +D  +NMVL D
Sbjct: 14  PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLED 53


>AJ238097-1|CAB45868.1|   91|Homo sapiens Lsm5 protein protein.
          Length = 91

 Score = 37.1 bits (82), Expect = 0.054
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = +1

Query: 142 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 261
           PL+L+   +  RI++ M++++E+ G L  +D  +NMVL D
Sbjct: 14  PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLED 53


>AF182291-1|AAD56229.1|   91|Homo sapiens U6 snRNA-associated
           Sm-like protein LSm5 protein.
          Length = 91

 Score = 37.1 bits (82), Expect = 0.054
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = +1

Query: 142 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 261
           PL+L+   +  RI++ M++++E+ G L  +D  +NMVL D
Sbjct: 14  PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLED 53


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,569,776
Number of Sequences: 237096
Number of extensions: 940474
Number of successful extensions: 1573
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1569
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)