Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_P08
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...   100   3e-22
Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    29   0.79 
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    29   0.79 
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    29   0.79 
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    27   3.2  
Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U97404-2|AAB93309.1|  795|Caenorhabditis elegans Acid-sensing/am...    27   5.5  
AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical ...    26   9.7  

>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score =  100 bits (240), Expect = 3e-22
 Identities = 52/92 (56%), Positives = 64/92 (69%)
 Frame = +2

Query: 71  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 250
           RV+KVTGG ASKLSKIRVVRK IAR+  V +Q  K  LR  Y + KYKP+DLR KKTRA+
Sbjct: 32  RVSKVTGGAASKLSKIRVVRKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRAI 91

Query: 251 RKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 346
           R+ LT HE  +++ K+  K      R +AVKA
Sbjct: 92  RRRLTAHELSLRSAKQQAKSRNQAVRKFAVKA 123


>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 197 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 310
           K   ++ +D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 268 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 306


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 197 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 310
           K   ++ +D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 197 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 310
           K   ++ +D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 158 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKK 310
           + QK K  ++   K+KK K    + KK +   K   K + + + R+E RKK
Sbjct: 288 FEQKKKKKVKKSKKSKKDKK---KEKKEKKKSKKANKEKEERRARREQRKK 335


>Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical
           protein T07D10.4 protein.
          Length = 413

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 328 SRWEERFLSDLFPRLDLCFVFSKSLAHSTGL 236
           S W+   +  +FPR+D C   S    + TG+
Sbjct: 232 SAWDYSDIDPIFPRVDYCLKMSAFNGYPTGM 262


>U97404-2|AAB93309.1|  795|Caenorhabditis elegans
           Acid-sensing/amiloride-sensitiveion channel family
           protein 1 protein.
          Length = 795

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 358 IIYSSFNGIDSRWEERFLSDLFPRLDLCFVFSKSLAHST 242
           I+  SFNG +   +  F+  L P    CF + + L ++T
Sbjct: 463 IMKCSFNGRECNVKHDFVEYLDPTYGACFTYGQKLGNNT 501


>AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical
           protein H16D19.1 protein.
          Length = 413

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 328 SRWEERFLSDLFPRLDLCFVFSKSLAHSTGL 236
           S W+   +  +FPR+D C   S    + TG+
Sbjct: 232 SAWDYSDIDPIFPRVDYCLKMSAFNGYPTGM 262


>Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical
           protein T13F3.2 protein.
          Length = 391

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 158 YHQKMKVNLRNHYKNKKY-KPLDLRAKKTRAMRKALTKH 271
           Y  ++  +L NHYKN  + +    R  K  A+ K+L KH
Sbjct: 332 YTNQLASDLHNHYKNDLHLEQYAQRVLKMMAIVKSLQKH 370


>Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical
           protein F47G9.1 protein.
          Length = 204

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 152 IVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 298
           I+ H     N  +  K +K KPL++  ++   M  ++TK  A ++ R+E
Sbjct: 110 ILKHGVEAKNYDDIAKAEKLKPLEVELRRLEDMADSITKDFAFMRQREE 158


>AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical
           protein Y6E2A.8 protein.
          Length = 444

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 221 DLRAKKTRAMRKALTKHEAKIKTRKEIRK 307
           DL+ +K   M++A    EA++K +KE  K
Sbjct: 318 DLKMRKRETMKRAEKMKEAELKKKKESSK 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,353,783
Number of Sequences: 27780
Number of extensions: 102763
Number of successful extensions: 405
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)