Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_P05
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 32 0.077
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 31 0.14
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 31 0.14
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 31 0.14
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.14
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 30 0.31
SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr... 30 0.31
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 30 0.31
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 29 0.41
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.41
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 28 0.95
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 28 0.95
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 27 1.7
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s... 27 1.7
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 27 2.2
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 2.2
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 27 2.2
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 27 2.2
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 2.2
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 27 2.9
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 2.9
SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|... 27 2.9
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 26 3.8
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom... 26 3.8
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 5.1
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 26 5.1
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 5.1
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr... 25 6.7
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 25 6.7
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 6.7
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 25 8.9
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 25 8.9
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 8.9
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 25 8.9
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 31.9 bits (69), Expect = 0.077
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 14/162 (8%)
Frame = +3
Query: 81 AGLEALRAEHTQLLAGL---ATNTEHENEKASLVKKSIEAIDLGLGEAQVMTALASHLQS 251
+ L L+++HT L + N E + L ++ +E + E ++ T+ +S
Sbjct: 919 SSLSDLQSKHTSLESQYNYSLRNIEQLQAASKLAEEMVERVKTEYDEYRLQTS-----ES 973
Query: 252 VEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQA----SEQRVAQLEEENKHL-EFMAS 416
+E K+ + +R+ L+DE+A++ + SE RVA L EENKHL ++S
Sbjct: 974 LEKNHLKITSLEQRI----VILQDEIASSSLRCENITKDSETRVALLLEENKHLNNELSS 1029
Query: 417 IRKYDSD-INEESDSNR-----TGQGEKKREDPMVELFPDDD 524
R + + +E+D + T K RED EL D
Sbjct: 1030 HRNAEKQHLEKENDYKQQLLLVTEDLRKTREDYEKELLRHAD 1071
Score = 30.7 bits (66), Expect = 0.18
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +3
Query: 129 LATNTEHENEKASLVKKSIEAIDLGLGEAQVMTALASHLQSVEAEKQKLRTQVRRLCQEN 308
L TN E++N++ + +++ E Q + +AS S+ + Q+ L EN
Sbjct: 103 LKTNLENQNKRFDALTTENQSLRRANSELQEQSKIASEQLSIAKD------QIEALQNEN 156
Query: 309 AWLRDELAAAQQHLQASEQRVAQ 377
+ L +++ +A Q L E+R Q
Sbjct: 157 SHLGEQVQSAHQALSDIEERKKQ 179
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 31.1 bits (67), Expect = 0.14
Identities = 15/62 (24%), Positives = 35/62 (56%)
Frame = +3
Query: 234 ASHLQSVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEEENKHLEFMA 413
A+H+ +E + ++L Q RRL ++ + E+ +++L++ + A L E+N ++ +
Sbjct: 363 AAHITELETKLKELHEQNRRLQRQKSLATQEIDLLRENLKSYDDEEAILSEKNTDMKKLE 422
Query: 414 SI 419
I
Sbjct: 423 RI 424
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 324 ELAAAQQHLQASEQRVAQLEEENKHLEFMASIRKYDSD 437
ELAAA+Q LQ QLEE K + + K +++
Sbjct: 201 ELAAAEQQLQELSVHNQQLEESIKQVSSSIELEKINAE 238
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 31.1 bits (67), Expect = 0.14
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +3
Query: 204 LGEAQVMTALASHLQSV----EAEKQKLRTQVRRLCQENAWLRDELAAAQQHL-QASEQR 368
L E ++ + ASHL+ V E+ ++ Q+ QEN R+ +A + HL +E +
Sbjct: 908 LTELKIESTKASHLKQVSYRLESRLFEISKQLDNSEQENNKFRERIAELESHLSNYAEAK 967
Query: 369 VAQLEEENKHLEFMASIRKYDSDINE 446
+AQ E E + + S + D ++ E
Sbjct: 968 LAQ-ERELEQTRVLISDQSQDGELKE 992
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 31.1 bits (67), Expect = 0.14
Identities = 25/114 (21%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Frame = +3
Query: 141 TEHENEKASLVKKSIEAIDLGLGEAQVMTALASHLQSVEAEKQKLRTQVRRLCQENAWLR 320
+E ENE + ++ K + + + L + QS+ +KQ +Q + + W+R
Sbjct: 338 SEKENELSEILPKYNAIVSEADDLNKRIMLLKNQKQSL-LDKQSRTSQFTTKKERDEWIR 396
Query: 321 DELAAAQQHLQASEQRVAQLEEENKHL--EFMASI-RKYDSDINEESDSNRTGQ 473
++L +++ ++++ L+ E + E A + RK + +I+ ES +R Q
Sbjct: 397 NQLLQINRNINSTKENSDYLKTEYDEMENELKAKLSRKKEIEISLESQGDRMSQ 450
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 31.1 bits (67), Expect = 0.14
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 9/144 (6%)
Frame = +3
Query: 87 LEALRAEHTQLLAGLAT-NTEHENEK--ASLVKKSIE--AIDLGLGEAQVMTALASHLQS 251
+E RAE+ L + L+ ++E+EN +S KS+E L E V L Q
Sbjct: 1034 IEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQKLLDEKDQR 1093
Query: 252 VEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVA----QLEEENKHLEFMASI 419
E ++L ++ +L +ENA ++DEL A ++ + A L+E++ LE + +
Sbjct: 1094 -NVELEELTSKYGKLGEENAQIKDELLALRKKSKKQHDLCANFVDDLKEKSDALEQLTNE 1152
Query: 420 RKYDSDINEESDSNRTGQGEKKRE 491
+ E+S+SN E++ +
Sbjct: 1153 KNELIVSLEQSNSNNEALVEERSD 1176
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 29.9 bits (64), Expect = 0.31
Identities = 26/125 (20%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Frame = +3
Query: 39 MTQEEMVAGARTVAAGLEALRAEHTQLLAGLA-TNTEHENEKASLVKKSIEAIDLGLGEA 215
+ + + + + + + LE L+ E+ QL LA ++E N + + ++ ++ + E
Sbjct: 411 LQKSKNTSSTKALTSHLEQLQQENQQLRMLLADADSEMMNLEYEIRQQMTREMEERVSEV 470
Query: 216 Q---VMTALASHLQSVEAEKQKLRTQ---VRRLCQENAWLRDELAAAQQHLQASEQRVAQ 377
+ + L Q +E QKL +++L EN+ + +A +Q ++ + +
Sbjct: 471 ERTFLTKLLEESAQGIEYTDQKLEKMGGWMKKLQDENSEKTETIAQLEQIIEELHEELRS 530
Query: 378 LEEEN 392
LEEE+
Sbjct: 531 LEEES 535
>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 112
Score = 29.9 bits (64), Expect = 0.31
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +3
Query: 186 EAIDLGLGEAQVMTALASHLQSVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQ 365
+A+ LG+ + + LAS ++AE LR + L ++ + + A+QHLQ ++
Sbjct: 50 KAVYTSLGKMFMKSDLASVRTHLDAEMASLREDIEALQKKQTYHETTASNAEQHLQKIKE 109
Query: 366 RVA 374
++
Sbjct: 110 SIS 112
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 29.9 bits (64), Expect = 0.31
Identities = 26/129 (20%), Positives = 61/129 (47%)
Frame = +3
Query: 69 RTVAAGLEALRAEHTQLLAGLATNTEHENEKASLVKKSIEAIDLGLGEAQVMTALASHLQ 248
+T+++ + L ++ ++A + +H ++ S ++K+I +L + E L
Sbjct: 961 QTISSKYKELEKDYLNIMA----DYQHSSQHLSNLEKAINEKNLNIRELN--EKLMRLDD 1014
Query: 249 SVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEEENKHLEFMASIRKY 428
+ +++ T+V+ L +ENA L+D+ + L + + ++ E E E A + +
Sbjct: 1015 ELLLKQRSYDTKVQELREENASLKDQCRTYESQLASLVSKYSETESELNKKE--AELVIF 1072
Query: 429 DSDINEESD 455
+I E D
Sbjct: 1073 QKEITEYRD 1081
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 29.5 bits (63), Expect = 0.41
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +3
Query: 255 EAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEEENKHLEFMASIRKYDS 434
E +KL+ +RLCQ+NA LR A ++ +SE V Q+ ++ + + I+ S
Sbjct: 3900 EISLEKLQNSWKRLCQKNAILRTHFAISE---DSSEPMVIQIVDKFEARSCLNQIKILPS 3956
Query: 435 DINEESDSNR 464
D+ R
Sbjct: 3957 RFTNIEDTLR 3966
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.5 bits (63), Expect = 0.41
Identities = 14/57 (24%), Positives = 32/57 (56%)
Frame = +3
Query: 246 QSVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEEENKHLEFMAS 416
+S+E E+ L ++++ L +N LR ++ +++ + +++EE HL +AS
Sbjct: 431 RSLEEERDVLESKLQTLEDDNNSLRLMTSSLGNQIESLRTQNREIDEEKNHLRLLAS 487
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 28.3 bits (60), Expect = 0.95
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 468 GQGEKKREDPMVELFPDDDHDDNRNNKSMSPTP 566
G+GE D M EL +++ D+ +S SP P
Sbjct: 333 GRGELDELDDMEELTDEEEEDEEEEAESQSPEP 365
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 28.3 bits (60), Expect = 0.95
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +3
Query: 324 ELAAAQQHLQASEQRVAQLE---EENKHLEFMASIRKYDSDIN-EESDSNRTGQGEKKRE 491
ELAA Q+H +A + + Q E ++N L +ASI + + + SDS T Q + +
Sbjct: 320 ELAALQEHNEAHDAAMRQYELERQQNAMLPGLASIDGLQALPHLDFSDSAVTNQSHSQSQ 379
Query: 492 DPMVELFPDDDHDDNRNNKSMSPTP 566
+ + L + + S +PTP
Sbjct: 380 NSLHPLISQSETHSIFSALSETPTP 404
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 366 RVAQLEEENKHLEFMASIRKYDSDINEESDSNRTGQGEKKREDPMVELFPDDDHDDNRNN 545
R ++ +EN E + I+ S +EE + T GEK+ ++ +E P N NN
Sbjct: 67 RAVEIADENACEEPVLKIKSVSSTESEEEKESSTEIGEKQEKETHLE--PKTPVQTNTNN 124
Query: 546 KSM 554
+
Sbjct: 125 NHL 127
>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 98
Score = 27.5 bits (58), Expect = 1.7
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2
Query: 589 TCWAKCIGGVGD 554
TCW KCIG +G+
Sbjct: 43 TCWPKCIGNIGN 54
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 219 VMTALASHLQSVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQ 377
V TALAS + ++Q+ + R + A R+ AAAQ+ + E+R A+
Sbjct: 275 VDTALASDPRIKLFKEQEKAAKAARKWEREAGAREAAAAAQKKKEEEERRAAE 327
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 2.2
Identities = 23/112 (20%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Frame = +3
Query: 138 NTEHE---NEKASLVKKSIEAIDLGLGEAQVMTALASHLQSVEAEKQKLRTQVRRLCQEN 308
NTE E +EK + V++ + + L +Q HL+ ++ Q+ Q+ ++
Sbjct: 438 NTEIEARQSEKLNEVQEETQRLSQLLISSQPALTEVKHLKLCLSDSQEELLQLNAKLEKA 497
Query: 309 AWLRDELAAAQQHLQASEQRVAQLEEE--NKHLEFMASIRKYDSDINEESDS 458
+ DEL +A+ L + + ++++ + I Y++++N E S
Sbjct: 498 NIVIDELNSAKLKLSKQVEEESSMKDDLTEMNQRLKEQIESYENEVNSEITS 549
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 390 NKHLEFMASIRKYDSDINEESDSNRTGQGEKKRE-DPMVEL-FPDDDHDDNRNNKS 551
N H ++ + D+ + +S+S T + E D E+ D DHDD N+ S
Sbjct: 168 NDHATDKENLLESDASSSNDSESELTDSADNMNESDSESEIESSDSDHDDGENSDS 223
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 249 SVEAEKQKLRTQVRRLCQENA-WLRDELAAAQQHLQASEQRVAQLEEENKHLEFMASIRK 425
S+E E +R + LC+ + D + + + ++ Q E + KHL F A +RK
Sbjct: 126 SLEKEDGLIRRSMTSLCRHGPKGMCDYCSPLEPYDESYRQ-----ENKIKHLSFHAYLRK 180
Query: 426 YDSDINEESDS 458
+S++N+ + S
Sbjct: 181 INSNVNKYASS 191
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.1 bits (57), Expect = 2.2
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +2
Query: 212 SSGNDGSGISPSVRRGREAKTPHPGPQAVPRERLAEGRAGCGSATPAGFRTTRSTAGGGE 391
SS + S +PS E K P A P E + ATP+G T ++ GE
Sbjct: 27 SSTKEESSNTPSTETQPEKKAEEPEAAAEPSESTSTPTNASSVATPSGTAPTSASLYVGE 86
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +3
Query: 387 ENKHLEFMASIRKYDSDINEESDSNRTGQGEKKREDPMVELFPDDDHDDNRNN 545
+ K + + R D+D++ +D T + ++ +++LF D+ + N N+
Sbjct: 567 QKKSTMYDTNARANDTDVDFSNDKQNTHDFQISHDENLIQLFNDESNFFNLND 619
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 2.9
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Frame = -3
Query: 402 PNAYSPPPAVLRVVRKPAGVAEPQPARPSA-------RRSLGTACGPG 280
PN SP P++ R V P RPSA R+S+G PG
Sbjct: 561 PNITSPSPSISVTQRPAVNVGPPPYVRPSAPSKLPDTRQSIGDPLPPG 608
>SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 294 LCQENAWLRDELAAA-QQHLQASEQRVAQLEEENKHLE 404
L E W+R++ A +QHL + + E ENK +E
Sbjct: 130 LSDEPLWIREDAREAMKQHLDPRQDEAFRKELENKKIE 167
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 387 ENKHLEFMASIRKYDSD-INEESDSNRTGQGEKKREDPMVELFPDDDHDDNRNN 545
+N++++ +S D D I EE + +G++K D M+ +F ++D D N+
Sbjct: 2 QNEYVDMNSSSEDSDGDSILEEGRLRPSFRGQQKERD-MLGIFGEEDEDGFHNS 54
>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 252 VEAEKQKLRTQVRRLCQENAWLRDELA 332
V+A KLR + + C+ N WL +LA
Sbjct: 13 VQAIWPKLRKEAEKQCEVNPWLAKDLA 39
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 303 ENAWLRDELAAAQQHLQASEQRVAQLEEENK 395
EN +++ELA + LQ +R+A++ +E+K
Sbjct: 995 ENQRMKEELAGPLKILQEMARRIAKVSKESK 1025
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 5.1
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Frame = +3
Query: 216 QVMTALASHLQSVEAEKQ--KLRTQVRRL---CQENAWLRDELAAAQQHLQASEQRVAQL 380
++ AL+S ++ E KQ +L ++++L C+ N ++LAA +E+ V
Sbjct: 36 EITQALSSSYEAEEKAKQLKELDFRLQQLSSFCEWNKLAFEKLAANMDKHLGTERLVTFY 95
Query: 381 EEENKHLEFMASIRKYDSDINEESDSNRTGQGEKK 485
E++ L+F S + Y+S I ++ ++ E K
Sbjct: 96 EQKVCKLDFANSSKIYESMIALKALNSSQNDSEVK 130
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.8 bits (54), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -2
Query: 214 ASPNPRSIASMLFLTREAFSFSCSVLVARPASSCVCSALRASSPAATVRAPATISSCV 41
A PN A+ + T + +V ++PA S V SA ASSP+ + A +++ V
Sbjct: 1033 ARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTSA--ASSPSNISKPSAPVANNV 1088
>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 162
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 309 AWLRDELAAAQQHLQASEQRVAQL-EEENKHLEFMASIRKYDSDINEESDSNRTGQGEKK 485
A+LR+ + +QQ + + +EN ++ A R D D+ + +++ G K
Sbjct: 12 AYLREAIKVSQQARDEGQHPFGCIIVDENDNVIMSAGNRVPDGDVTQHAETRAVGLITKT 71
Query: 486 RED 494
R D
Sbjct: 72 RRD 74
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 6.7
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +3
Query: 303 ENAWLRDELAAAQQHLQASEQRVAQLEEENKHLEFMASIRKYD--SDINEESDSNRTGQG 476
E W + LAA + + E+ + E E LEF++ + SD+ + S+++ +
Sbjct: 183 EEIWNK-VLAAREGLIDEGEE---EEEREEAELEFVSDDEDEEEISDLEDWLGSDQSMET 238
Query: 477 EKKREDPMVELFPDDDHDDNRNNK 548
+ E+ E D+D D++ K
Sbjct: 239 SESEEEESSESESDEDEDEDNKGK 262
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 390 NKHLEFMASIRKYDSDINEESDSNRTGQGEKKREDPMVELFPDDD 524
++ E +AS++ ++ + + SN G KKR+ V PD+D
Sbjct: 471 SRQSEEIASLQAENAVFSSDPASNDEKTGNKKRKKKSVSWKPDND 515
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +3
Query: 354 ASEQRVAQLEEENKHLEFMASIRKYDSDINEESDSNRT 467
+ E+ ++ +EEEN+ + + RK + ++ E T
Sbjct: 545 SDEESLSDMEEENETFDALVDRRKTEQQVSNEKTPQET 582
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 8.9
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +3
Query: 222 MTALASHLQSVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEEENKHL 401
M++++ + ++ K ++T + + + DE A+ Q+ + E V + EEE KHL
Sbjct: 1 MSSVSKNARAYRQRKVGIKTVMPIYFERDIPDFDEEASLQRTVPLVESGVEKEEEEEKHL 60
Query: 402 E 404
+
Sbjct: 61 Q 61
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 181 ASKLSILDWEKLR 219
+SKLSILDWE L+
Sbjct: 82 SSKLSILDWEALQ 94
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 309 AWLRDELAAAQQHLQASEQRVAQLEEENK--HLEFMASIRKYDSDINEESDSNRTGQGEK 482
AW++ + L+ ++R+++LEE+ + F D D+N DS+ + E+
Sbjct: 201 AWMKLLDTKGSEELKKEQKRISELEEKERIQKKAFEDKGLVSDQDVNHSIDSDDQSEHEQ 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,123
Number of Sequences: 5004
Number of extensions: 40101
Number of successful extensions: 204
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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