Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_P01
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1562 - 27881885-27881962,27882801-27882887,27883971-278840...    77   9e-15
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397...    32   0.34 
02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087     31   1.1  
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167...    28   5.6  
04_03_0643 + 18328807-18331969,18332560-18332627                       28   5.6  
10_02_0185 - 6386761-6387122,6387589-6387826,6388215-6389696           27   9.8  
10_02_0058 - 4695400-4695648,4695846-4696112,4706026-4706430           27   9.8  

>08_02_1562 -
           27881885-27881962,27882801-27882887,27883971-27884048,
           27884100-27884267,27884353-27884465,27885360-27885684
          Length = 282

 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 39/92 (42%), Positives = 50/92 (54%)
 Frame = +1

Query: 232 LFICLGNICRSPIAEAVFQKTVNDMNLGEHWDIDSAAIGGWHVGNPPDWRALDTLKKHNV 411
           LF+CLGNICRSP AEAVF+  V+   L   + IDSA   G+H GN  D R     KK  +
Sbjct: 104 LFVCLGNICRSPAAEAVFRNLVSKRGLESKFLIDSAGTIGYHEGNKADSRMRSASKKRGI 163

Query: 412 PYNNHARQITSEDFDYYDYIFGMDESNMKDLN 507
              + +R +   DF  +D I  MD  N   L+
Sbjct: 164 EVTSISRPVKPSDFRDFDLILAMDRQNYGTLS 195


>06_01_0558 -
           3968211-3969475,3970198-3970266,3970374-3970529,
           3971075-3971405
          Length = 606

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 352 WHVGNPPDWRALDTLKKHNVPYNNHARQITSEDFD 456
           W  GNPPDW + D  +   V  ++   ++T+ D D
Sbjct: 38  WPAGNPPDWSSRDCCRWERVTCSSITGRVTALDLD 72


>02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087
          Length = 790

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -2

Query: 511 FCSNLSYWIHPCQRYNHNNRSLQKLFVLHGCCMERYASSKYLVLSNRE 368
           FC+ L + +H C    H    L+K FV   C +  Y  ++Y  +S +E
Sbjct: 477 FCARLEHLVHVCHDLLHGKTDLEK-FVHEVCLVLEYIINQYKNISFQE 523


>05_05_0362 +
           24415257-24415481,24415585-24415835,24416659-24416755,
           24417272-24417820,24418029-24418482,24418747-24418860,
           24418940-24419023,24419499-24420067
          Length = 780

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 172 NQRESSIKLALKMVDHKKKALFICLGNICRSPIAEAVFQKTVNDMNLGEHW 324
           N  E ++ +  K     K A F  + N  + P+A AVF   +  +N  E W
Sbjct: 457 NHVERTLGVVKKRFPILKVATFHKIENQVKIPVAAAVFHNIIRSLNGDEQW 507


>04_03_0643 + 18328807-18331969,18332560-18332627
          Length = 1076

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +1

Query: 268 IAEAVFQKTVNDMNLGEHWDIDSAAIGGWHVGNPPDWRALDTLKKHNVPYNNHARQITSE 447
           IA+   Q T   + L  HW+++   I  +   + P W   D LK          R I S 
Sbjct: 726 IADEQLQMTEEQIELLPHWNLEHLIIKNYLGQSCPSWLQPDCLKVLTSLELYGCRNIQS- 784

Query: 448 DFDYYDYIFG-MDESN 492
              ++D +F  ++ESN
Sbjct: 785 -LSFFDPLFSDLEESN 799


>10_02_0185 - 6386761-6387122,6387589-6387826,6388215-6389696
          Length = 693

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +1

Query: 376 WRALDTL--KKHNVPYNNH-ARQITSEDFDYYDYIFGMDESNMKDLNKKAPKGSKAKLLL 546
           WR +D+      +VPY    A + T +D  +  Y+  +     ++L ++  +        
Sbjct: 248 WRLMDSRLPPPRSVPYRQSPALKATLQDAIHGFYLKALARLPARELRRRFHRSLLEAGHC 307

Query: 547 FGDFDPQGDRIIRDPYYDS 603
           +G FDP  + II   +YD+
Sbjct: 308 YGPFDPVSNIIINTIWYDA 326


>10_02_0058 - 4695400-4695648,4695846-4696112,4706026-4706430
          Length = 306

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = +1

Query: 238 ICLGNICRSPIAEAVFQKTVNDMNLGEHWDIDSAAIGGWHVGNPPDWRALDTLKKHNVPY 417
           IC G IC   + +A   + +ND  L           GGW V +    + +D L+  +   
Sbjct: 151 ICAGKICSPEVCDAYALQFMNDFTLFLESRGKEIIPGGWLVISVKGRKCIDNLRSGDTRM 210

Query: 418 NNH 426
            +H
Sbjct: 211 WDH 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,506,644
Number of Sequences: 37544
Number of extensions: 345606
Number of successful extensions: 764
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)