Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_P01
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024876-7|AAF60890.4|  211|Caenorhabditis elegans Hypothetical ...    63   1e-10
Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical pr...    33   0.23 
U42436-6|AAM15564.1|  615|Caenorhabditis elegans Not-like (yeast...    33   0.23 
U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast...    33   0.23 
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei...    32   0.41 
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot...    32   0.41 
U88181-1|AAB42305.1|  149|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U58727-1|AAB00581.1|  358|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z92796-6|CAB63232.1|  405|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AC024876-7|AAF60890.4|  211|Caenorhabditis elegans Hypothetical
           protein Y94H6A.7 protein.
          Length = 211

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
 Frame = +1

Query: 385 LDTLKKHNVPYNNHARQITS-EDFDYYDYIFGMDESNMKDLN---KKAPKGS-KAKLLLF 549
           +  LKK+ +    H  ++TS +DF  +DYIFGMD+ N++DL    +K PK   KA++L+ 
Sbjct: 1   MGALKKYGIKDYQHRARVTSPDDFRKFDYIFGMDDQNIEDLQEIARKVPKTERKAEILML 60

Query: 550 GDFDPQ-GDRIIRDPYYDSDSXGFEK 624
           G  D   G R + DPYY+S S  F++
Sbjct: 61  GVQDVMAGKREVPDPYYESGSKQFDE 86


>Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical
           protein R08D7.3 protein.
          Length = 570

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 358 VGNPPDWRALDTL-KKHNVPYNNHARQITSEDFDYYDYIFGMDESNMKDLNKKAP 519
           +G   DW  +D   ++ N  YN       +     +DYI GMDE N + ++   P
Sbjct: 42  IGRVADWIGVDRFYRRGNERYNERVYGSAANAGSQFDYIHGMDEHNFQLVDTSKP 96


>U42436-6|AAM15564.1|  615|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform b protein.
          Length = 615

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 271 AEAVFQKTVNDMNLGEHWDIDSAAIGGWHVGNPPDWRAL-DTLKKHNVPYNNHARQITSE 447
           AEA    T +DM+LG+H + +   I   +   PP    L   L K   P +N  R+   +
Sbjct: 38  AEAEISFTKDDMHLGKHTEYEKRLIESMNSRPPPPQSTLASQLDKILAPTSNSPRRYLED 97

Query: 448 DFDYYD 465
           D D  D
Sbjct: 98  DSDTVD 103


>U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform a protein.
          Length = 796

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 271 AEAVFQKTVNDMNLGEHWDIDSAAIGGWHVGNPPDWRAL-DTLKKHNVPYNNHARQITSE 447
           AEA    T +DM+LG+H + +   I   +   PP    L   L K   P +N  R+   +
Sbjct: 219 AEAEISFTKDDMHLGKHTEYEKRLIESMNSRPPPPQSTLASQLDKILAPTSNSPRRYLED 278

Query: 448 DFDYYD 465
           D D  D
Sbjct: 279 DSDTVD 284


>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
            protein.
          Length = 1908

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 373  DWRALDTLKKHNVPYNNHARQITSEDFDYYDYIFGMDESNMKDLNKKAP 519
            +W+ L+TL  +NVP NN    +TS+    Y+     D S    ++ K P
Sbjct: 1604 NWKRLNTLAHYNVP-NNAILTLTSKSNSLYNLSILSDRSEKSSVSMKTP 1651


>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A protein.
          Length = 1951

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 373  DWRALDTLKKHNVPYNNHARQITSEDFDYYDYIFGMDESNMKDLNKKAP 519
            +W+ L+TL  +NVP NN    +TS+    Y+     D S    ++ K P
Sbjct: 1610 NWKRLNTLAHYNVP-NNAILTLTSKSNSLYNLSILSDRSEKSSVSMKTP 1657


>U88181-1|AAB42305.1|  149|Caenorhabditis elegans Hypothetical
           protein C55B6.4 protein.
          Length = 149

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/77 (20%), Positives = 39/77 (50%)
 Frame = +1

Query: 226 KALFICLGNICRSPIAEAVFQKTVNDMNLGEHWDIDSAAIGGWHVGNPPDWRALDTLKKH 405
           + L ICL     S ++  ++ + + D +    + + +  + G+ V  P +W+  + ++KH
Sbjct: 70  ETLEICLQPSTNSTVSNVLY-RPITDPSDDRIFVVTNKNVDGY-VKPPKNWKFEEEIRKH 127

Query: 406 NVPYNNHARQITSEDFD 456
           N   +   R++T+ D +
Sbjct: 128 NEKDSKKLRKLTTADLE 144


>U58727-1|AAB00581.1|  358|Caenorhabditis elegans Hypothetical
           protein D1005.3 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +1

Query: 370 PDWRALDTLK--KHNVPYNNHARQITSEDFDYYDYIFGMDESNMKDLNKKAPKGSKAKLL 543
           PD+ A  T +  K  VPY+++ ++ + E  D  D    +D+S  +      PK  K K  
Sbjct: 195 PDFGATKTRRAVKRPVPYDDYQKEYSEESSDMTDNDGSVDDSYFE------PKSKKTKSA 248

Query: 544 LFGDFDPQ 567
              +F PQ
Sbjct: 249 GLENFKPQ 256


>Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical
           protein VC27A7L.1 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 537 FRFTPFRSFFVQIFHIGFIH 478
           FRF   RS F+ I ++GFIH
Sbjct: 38  FRFIDNRSNFIAIIYVGFIH 57


>Z92796-6|CAB63232.1|  405|Caenorhabditis elegans Hypothetical
           protein H25K10.7 protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 321 MFTQIHVIYGFLENSLSNW 265
           ++T  HV+Y FL+N +SN+
Sbjct: 79  LYTMFHVVYVFLDNIVSNY 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,722,387
Number of Sequences: 27780
Number of extensions: 319704
Number of successful extensions: 777
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)