Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_O18
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0257 + 26723858-26724049,26724073-26724230,26724886-267250...    39   0.002
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270...    36   0.014
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916...    36   0.014
04_04_1418 + 33428527-33428895,33429206-33429280,33429697-334299...    32   0.23 
04_01_0215 - 2728413-2728599,2729794-2730318,2730548-2730755,273...    27   6.6  
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655...    27   8.8  

>05_06_0257 +
          26723858-26724049,26724073-26724230,26724886-26725024,
          26725130-26725315,26727117-26727310,26728113-26728193,
          26728248-26728338,26728414-26728590
          Length = 405

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +1

Query: 13 DVALVCMQHALSTEKEEIMGLLIGEV 90
          +V L C+ HAL+TE EE+MGLL G++
Sbjct: 11 EVWLTCLSHALTTETEEVMGLLFGDI 36



 Score = 35.1 bits (77), Expect = 0.033
 Identities = 15/41 (36%), Positives = 27/41 (65%)
 Frame = +3

Query: 300 DLATQSMYQRMDASFVGIIFAVFLTDQSTKAPSVQITWFSN 422
           D+ TQ+M+Q M+  FVG+IF+ F ++ + K   +Q+  F +
Sbjct: 135 DVRTQAMFQLMEPGFVGLIFSCF-SEDAQKVGKIQVIAFQS 174


>05_04_0078 +
           17725931-17726057,17726128-17726305,17726942-17727023,
           17728500-17728676,17728763-17728930,17729028-17729219
          Length = 307

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 212 ELAAEVGQPLRVVGWYHSHPHITVWPS 292
           ++  + G+P  VVGWYHSHP    W S
Sbjct: 95  DMLKQTGRPEMVVGWYHSHPGFGCWLS 121



 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 1   VYXSDVALVCM-QHALSTEKEEIMGLLIGEVHDN 99
           VY S +AL+ M +H  +    E+MGL++GE  D+
Sbjct: 29  VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDD 62


>01_01_1151 +
           9165454-9165580,9165658-9165835,9167256-9167337,
           9167907-9168083,9168174-9168341,9168466-9168657
          Length = 307

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 212 ELAAEVGQPLRVVGWYHSHPHITVWPS 292
           ++  + G+P  VVGWYHSHP    W S
Sbjct: 95  DMLKQTGRPEMVVGWYHSHPGFGCWLS 121



 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 1   VYXSDVALVCM-QHALSTEKEEIMGLLIGEVHDN 99
           VY S +AL+ M +H  +    E+MGL++GE  D+
Sbjct: 29  VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDD 62


>04_04_1418 +
           33428527-33428895,33429206-33429280,33429697-33429978,
           33430058-33430205,33430309-33430388,33431238-33431318,
           33431416-33431514
          Length = 377

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 134 FAXLDKKPDRVEISEEQLVQATVRAEELAAEV-GQPLRVVGWYHSHPHITVWPS 292
           ++ ++K+       +  + + +V A  L  ++ G+   VVGWYHSHP    W S
Sbjct: 117 YSTINKQIGSHHAIDHNVSEVSVFANTLMTDLAGRLENVVGWYHSHPGYGCWLS 170


>04_01_0215 -
           2728413-2728599,2729794-2730318,2730548-2730755,
           2730946-2731001,2731294-2731394,2731923-2732150
          Length = 434

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 240 RGWPTSAANSSALTVA*TSCSSDISTRS 157
           +GWP++A  +S  T+A  S S DI+ RS
Sbjct: 76  KGWPSAALRAST-TIATRSTSPDIAARS 102


>02_03_0406 +
           18663986-18664059,18665082-18665405,18665499-18665559,
           18666136-18666282,18666368-18666492,18666619-18666648,
           18666689-18666893,18667532-18667741,18667886-18667888,
           18670034-18670942,18671239-18672069
          Length = 972

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 111 FNSVISNTSPXWIKNLTVLKY 173
           +N+ +S   P WIK+L  LKY
Sbjct: 736 YNNQLSGPIPTWIKSLNYLKY 756


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,678,061
Number of Sequences: 37544
Number of extensions: 170535
Number of successful extensions: 386
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)