Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_O18
(510 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome re... 36 0.013
U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signaloso... 34 0.052
U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical pr... 34 0.069
Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical pr... 30 0.85
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 29 1.5
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 29 1.5
Z79753-7|CAB02085.2| 448|Caenorhabditis elegans Hypothetical pr... 28 3.4
U41510-1|ABP49525.1| 327|Caenorhabditis elegans Hypothetical pr... 27 6.0
>AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 11 protein.
Length = 312
Score = 36.3 bits (80), Expect = 0.013
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 212 ELAAEVGQPLRVVGWYHSHPHITVWPS 292
++ + G+P VVGWYHSHP W S
Sbjct: 99 DMLKQTGRPEMVVGWYHSHPGFGCWLS 125
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 1 VYXSDVALVCM-QHALSTEKEEIMGLLIGEVHDN 99
VY S +AL+ M +H + E+MGL++GE D+
Sbjct: 33 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDD 66
>U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signalosome
subunit protein 5 protein.
Length = 368
Score = 34.3 bits (75), Expect = 0.052
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 161 RVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPS 292
RV + TV +E E G+ +VVGWYHSHP W S
Sbjct: 107 RVNAQAQAYEYMTVYSEMCDTE-GRKEKVVGWYHSHPGYGCWLS 149
>U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical
protein F37A4.5 protein.
Length = 319
Score = 33.9 bits (74), Expect = 0.069
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 212 ELAAEVGQPLRVVGWYHSHPHITVWPS 292
+L VG+ VVGWYHSHP W S
Sbjct: 95 DLLKLVGRTENVVGWYHSHPGFGCWLS 121
>Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical
protein C03E10.5 protein.
Length = 623
Score = 30.3 bits (65), Expect = 0.85
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +2
Query: 257 YHSHPHIT---VWPSHX*FGYSINVSKDGC*FCWNYFCSISYRPINKGPFS 400
Y HP I VW F + +N +DG +CWNYF S P ++ ++
Sbjct: 231 YGFHPTIRNGKVWCIRVFFHFVLNY-QDGSDYCWNYFHSTLSGPADENEYN 280
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 155 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 277
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1402 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1442
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 155 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 277
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1495 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1535
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 155 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 277
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1495 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1535
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 155 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 277
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1495 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1535
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 155 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 277
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1402 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1442
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 155 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 277
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1495 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1535
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 155 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 277
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1495 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1535
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 155 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 277
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1495 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1535
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 155 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 277
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1494 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1534
>Z79753-7|CAB02085.2| 448|Caenorhabditis elegans Hypothetical
protein F20G2.5 protein.
Length = 448
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 362 SISYRPINKGPFSSNYLVFKSINEGASQSRIEIEMEIVTNTDSLVNKQ 505
SIS++P+ F SN L++K + +QS + +I TNT +++ Q
Sbjct: 244 SISFKPLTPTQFQSNLLIYKH-GDPIAQS---LPQQIPTNTFTVIMSQ 287
>U41510-1|ABP49525.1| 327|Caenorhabditis elegans Hypothetical
protein ZC449.6 protein.
Length = 327
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 401 SNYLVFKSINEGASQSRIEIEMEIVTNTDSL 493
S+YL +K N +R E+E+ I NT S+
Sbjct: 273 SSYLCYKIFNSSPPMTRFELEVLITDNTYSI 303
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,577,454
Number of Sequences: 27780
Number of extensions: 161097
Number of successful extensions: 396
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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