Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_O17
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   177   1e-45
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   5.4  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   7.2  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   7.2  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   9.5  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  177 bits (430), Expect = 1e-45
 Identities = 78/105 (74%), Positives = 98/105 (93%)
 Frame = +3

Query: 174 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 353
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 354 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILG 488
           KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+G
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMG 131



 Score = 96.3 bits (229), Expect = 3e-21
 Identities = 39/66 (59%), Positives = 51/66 (77%)
 Frame = +1

Query: 445 ARKSPLPFEALLSLAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTG 624
           A++        + + KLS++P+RRGYWG  +G PHTVP KV+GKCGSVTVRL+PAPRG G
Sbjct: 117 AKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAG 176

Query: 625 IVSAPV 642
           +V+APV
Sbjct: 177 LVAAPV 182


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 540 KATHRPLQGHRQVWFCNSPADSCPSWYWN 626
           +A    L G  +   C   + SCPS++WN
Sbjct: 153 RADRAKLDGLYECILCACCSTSCPSYWWN 181


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 177 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 299
           +D+ EW P++    LV   ++   E  +++    K++E+ID
Sbjct: 241 KDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELID 281


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 518 PLRTGKTDNLAKDNSASNGSGDFLAALHT 432
           P+R G+TD     +S +  +GDF+  ++T
Sbjct: 3   PVRRGQTDTALDISSHAKTNGDFIKKMNT 31


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 283 NSRSLISSSARP*MMRF*RSCLYRNKHVPDSAHVSRH 393
           +SR+ I S+     +++  S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,936
Number of Sequences: 5004
Number of extensions: 51531
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)