Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_O17
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 165 4e-41
07_01_0756 + 5819367-5820038,5820847-5821005 160 1e-39
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 48 6e-06
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 1e-05
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 3.2
11_01_0395 + 2999855-2999920,3000605-3002191 28 7.4
07_03_1225 + 24996082-24996774 28 7.4
07_03_1224 + 24991884-24992588 28 7.4
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541... 27 9.8
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 27 9.8
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 165 bits (400), Expect = 4e-41
Identities = 74/104 (71%), Positives = 92/104 (88%)
Frame = +3
Query: 174 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 353
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96
Query: 354 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 485
KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIIL
Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140
Score = 112 bits (269), Expect = 3e-25
Identities = 49/69 (71%), Positives = 58/69 (84%)
Frame = +1
Query: 445 ARKSPLPFEALLSLAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTG 624
A++ + LAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVR++PAPRG+G
Sbjct: 127 AKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSG 186
Query: 625 IVSAPVPXK 651
IV+A VP K
Sbjct: 187 IVAARVPKK 195
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 160 bits (388), Expect = 1e-39
Identities = 73/104 (70%), Positives = 91/104 (87%)
Frame = +3
Query: 174 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 353
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99
Query: 354 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 485
KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIIL
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143
Score = 113 bits (273), Expect = 9e-26
Identities = 50/69 (72%), Positives = 58/69 (84%)
Frame = +1
Query: 445 ARKSPLPFEALLSLAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTG 624
A++ + LAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+G
Sbjct: 130 AKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSG 189
Query: 625 IVSAPVPXK 651
IV+A VP K
Sbjct: 190 IVAAHVPKK 198
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 48.0 bits (109), Expect = 6e-06
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +1
Query: 541 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXK 651
KPHTV CKV K GSVTVR++ P G+ +V+ VP K
Sbjct: 47 KPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKK 83
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +3
Query: 393 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILG*VVCFTSSKR 518
FV +GD + HI LGVKC+K AT + GAIIL C + R
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILAMFRCAEGATR 41
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +3
Query: 321 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILG 488
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + G
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNG 226
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 455 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 339
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 261 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 380
+F +++ ++IDF L L D + I+P+ R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
>07_03_1225 + 24996082-24996774
Length = 230
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 361 HVPDSAHVSRHLLPLATTTVILVWV*SAARKSPL-PFEAL-LSLAKL 495
H A V H+LP A + + WV +A SP+ P A+ LSLAKL
Sbjct: 85 HPAHVAAVQGHVLPNALDSTAIDWVNAALVPSPVNPGSAVRLSLAKL 131
>07_03_1224 + 24991884-24992588
Length = 234
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 361 HVPDSAHVSRHLLPLATTTVILVWV*SAARKSPL-PFEAL-LSLAKL 495
H A V H+LP A T + WV +A SP+ P A+ L+LAK+
Sbjct: 89 HPAHVAAVQGHVLPNALDTTAIDWVNAALAPSPVTPGSAVRLTLAKV 135
>12_02_0387 +
18453328-18453456,18453699-18453836,18454085-18454144,
18461532-18462591,18463022-18463521
Length = 628
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 540 KATHRPLQGHRQVWFCNSPADSCPSW 617
K H L G + W+ N PA+S SW
Sbjct: 243 KVIHLALDGIARFWYFNLPANSIYSW 268
>11_01_0515 +
4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 177 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLG 311
+ KE +P G V G+ +++ + SLPIK++ + FF G
Sbjct: 805 DGSKEVIPQEYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSFFSG 849
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,750,747
Number of Sequences: 37544
Number of extensions: 378782
Number of successful extensions: 1094
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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