Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_O17
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 158 4e-39
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 30 1.2
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 30 1.2
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 5.0
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 5.0
Z77663-7|CAB01206.1| 856|Caenorhabditis elegans Hypothetical pr... 27 8.7
U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synt... 27 8.7
AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA sy... 27 8.7
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 158 bits (383), Expect = 4e-39
Identities = 80/102 (78%), Positives = 86/102 (84%)
Frame = +3
Query: 177 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 356
E + EW PVTKLGRLV+E KI LE IYL SLPIKEFEIID L +L DEVLKI PVQK
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQK 110
Query: 357 QTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAII 482
QT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIV 152
Score = 110 bits (265), Expect = 7e-25
Identities = 49/55 (89%), Positives = 51/55 (92%)
Frame = +1
Query: 487 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXK 651
AKL+V+PVRRGYWGNKIG PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPVP K
Sbjct: 154 AKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKK 208
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 382 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 206
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 205 VTGT 194
+ T
Sbjct: 582 QSNT 585
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 382 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 206
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 205 VTGT 194
+ T
Sbjct: 582 QSNT 585
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 332 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 475
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 332 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 475
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>Z77663-7|CAB01206.1| 856|Caenorhabditis elegans Hypothetical
protein F53F4.8 protein.
Length = 856
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 512 RTGKTDNLAKDNSASNGSGDFLAALHTQTNMTVVVAN 402
+ G T NL K+N N GD + +TNM V N
Sbjct: 69 QNGSTYNLQKNNGPKNPWGDDFQNIQLKTNMVGSVLN 105
>U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna
synthetase protein 1 protein.
Length = 441
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 15 DCLS-EPIVQQWRTLLQPVDVA 77
+CL+ E +VQ WR+LL P D +
Sbjct: 145 ECLTAEKLVQTWRSLLHPTDAS 166
>AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA
synthetase protein.
Length = 441
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 15 DCLS-EPIVQQWRTLLQPVDVA 77
+CL+ E +VQ WR+LL P D +
Sbjct: 145 ECLTAEKLVQTWRSLLHPTDAS 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,602,704
Number of Sequences: 27780
Number of extensions: 304163
Number of successful extensions: 876
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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