Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_O16
(493 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 95 5e-21
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 95 5e-21
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 1.2
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 1.5
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 1.5
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 2.0
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 26 2.7
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 6.2
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 95.1 bits (226), Expect = 5e-21
Identities = 40/64 (62%), Positives = 51/64 (79%)
Frame = +2
Query: 179 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 358
Q KNKYN PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AA
Sbjct: 39 QAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAA 98
Query: 359 YSTG 370
Y+TG
Sbjct: 99 YATG 102
Score = 62.9 bits (146), Expect = 3e-11
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +1
Query: 64 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLXCSGQEQ 192
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL + +
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNK 43
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 95.1 bits (226), Expect = 5e-21
Identities = 40/64 (62%), Positives = 51/64 (79%)
Frame = +2
Query: 179 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 358
Q KNKYN PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AA
Sbjct: 39 QAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAA 98
Query: 359 YSTG 370
Y+TG
Sbjct: 99 YATG 102
Score = 62.9 bits (146), Expect = 3e-11
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +1
Query: 64 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLXCSGQEQ 192
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL + +
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNK 43
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.5 bits (58), Expect = 1.2
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +2
Query: 2 LPFFLLGVXSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGVVKGKLIIMLVNASXVQ 181
LPF+ +G S LR +IW SL+ T G SR + KL+ + N VQ
Sbjct: 984 LPFYCIGFKSAMPEYTLRTRIWASLRSQTLYRTISGFMNYSRAI---KLLYRVENPEIVQ 1040
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 27.1 bits (57), Expect = 1.5
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Frame = +2
Query: 2 LPFFLLGVXSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGVVKGKLIIMLVNASXVQ 181
LPF+ +G + LR +IW SL+ T G SR + KL+ + N Q
Sbjct: 960 LPFYCIGFKNATPEYTLRTRIWASLRSQTLYRTVSGFMNYSRAI---KLLYRVENPDVAQ 1016
Query: 182 -DKNKYNTPKYRLIVRLSNKDVTC--QVAYSRIEGDHI 286
+ + + +Y L S K C Y++ D I
Sbjct: 1017 LFEGQMDVLEYELDRMASRKFKMCVSMQRYAKFTADEI 1054
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 1.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 395 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 303
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 2.0
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 2 LPFFLLGVXSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGV 133
LPF+ +G S LR +IW SL+ T G SR +
Sbjct: 802 LPFYCVGFKSATPEYTLRTRIWASLRTQTLYRTINGFSNYSRAI 845
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 26.2 bits (55), Expect = 2.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 2 LPFFLLGVXSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGV 133
LPF+ +G S LR +IW SL+ T+ G SR +
Sbjct: 898 LPFYCIGFKSTAPEYTLRTRIWASLRSQTLYRTASGMMNYSRAL 941
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 6.2
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = +2
Query: 233 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 355
N+D + + D VC +++ + YG + G +Y A
Sbjct: 231 NRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVA 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,440
Number of Sequences: 5004
Number of extensions: 40286
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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