Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_N14
(514 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 85 8e-18
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 85 8e-18
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 73 3e-14
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 73 3e-14
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 73 3e-14
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 43 3e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 35 0.008
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 28 0.71
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 2.2
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 2.9
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 8.8
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 84.6 bits (200), Expect = 8e-18
Identities = 44/81 (54%), Positives = 49/81 (60%)
Frame = +2
Query: 35 KLKFKTKRESXPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYS 214
K K + K P+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV Y+
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYT 86
Query: 215 TPXXXXXXXXXXXLAVLRFYK 277
TP LAVL++YK
Sbjct: 87 TPKKIKHKHKKVELAVLKYYK 107
Score = 53.6 bits (123), Expect = 2e-08
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = +3
Query: 270 FTRVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTM 401
+ +V+++G + RLRREC CGA FMA +DR YCG+CH T+
Sbjct: 105 YYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLTL 146
Score = 37.9 bits (84), Expect = 9e-04
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +1
Query: 13 SDTIENVKAKIQDKEGIP 66
SDTI+NVK+KIQDKEGIP
Sbjct: 20 SDTIDNVKSKIQDKEGIP 37
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 84.6 bits (200), Expect = 8e-18
Identities = 44/81 (54%), Positives = 49/81 (60%)
Frame = +2
Query: 35 KLKFKTKRESXPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYS 214
K K + K P+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV Y+
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYT 86
Query: 215 TPXXXXXXXXXXXLAVLRFYK 277
TP LAVL++YK
Sbjct: 87 TPKKIKHKHKKVELAVLKYYK 107
Score = 53.6 bits (123), Expect = 2e-08
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = +3
Query: 270 FTRVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTM 401
+ +V+++G + RLRREC CGA FMA +DR YCG+CH T+
Sbjct: 105 YYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLTL 146
Score = 37.9 bits (84), Expect = 9e-04
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +1
Query: 13 SDTIENVKAKIQDKEGIP 66
SDTI+NVK+KIQDKEGIP
Sbjct: 20 SDTIDNVKSKIQDKEGIP 37
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 72.9 bits (171), Expect = 3e-14
Identities = 35/44 (79%), Positives = 37/44 (84%)
Frame = +2
Query: 35 KLKFKTKRESXPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 166
K K + K P+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 37.9 bits (84), Expect = 9e-04
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +1
Query: 13 SDTIENVKAKIQDKEGIP 66
SDTI+NVK+KIQDKEGIP
Sbjct: 20 SDTIDNVKSKIQDKEGIP 37
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 72.9 bits (171), Expect = 3e-14
Identities = 35/44 (79%), Positives = 37/44 (84%)
Frame = +2
Query: 35 KLKFKTKRESXPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 166
K K + K P+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 37.9 bits (84), Expect = 9e-04
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +1
Query: 13 SDTIENVKAKIQDKEGIP 66
SDTI+NVK+KIQDKEGIP
Sbjct: 20 SDTIDNVKSKIQDKEGIP 37
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 72.9 bits (171), Expect = 3e-14
Identities = 35/44 (79%), Positives = 37/44 (84%)
Frame = +2
Query: 35 KLKFKTKRESXPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 166
K K + K P+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 72.9 bits (171), Expect = 3e-14
Identities = 35/44 (79%), Positives = 37/44 (84%)
Frame = +2
Query: 35 KLKFKTKRESXPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 166
K K + K P+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 103 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 72.9 bits (171), Expect = 3e-14
Identities = 35/44 (79%), Positives = 37/44 (84%)
Frame = +2
Query: 35 KLKFKTKRESXPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 166
K K + K P+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 179 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 72.9 bits (171), Expect = 3e-14
Identities = 35/44 (79%), Positives = 37/44 (84%)
Frame = +2
Query: 35 KLKFKTKRESXPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 166
K K + K P+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 255 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 72.9 bits (171), Expect = 3e-14
Identities = 35/44 (79%), Positives = 37/44 (84%)
Frame = +2
Query: 35 KLKFKTKRESXPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 166
K K + K P+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 331 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 37.9 bits (84), Expect = 9e-04
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +1
Query: 13 SDTIENVKAKIQDKEGIP 66
SDTI+NVK+KIQDKEGIP
Sbjct: 20 SDTIDNVKSKIQDKEGIP 37
Score = 37.9 bits (84), Expect = 9e-04
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +1
Query: 13 SDTIENVKAKIQDKEGIP 66
SDTI+NVK+KIQDKEGIP
Sbjct: 96 SDTIDNVKSKIQDKEGIP 113
Score = 37.9 bits (84), Expect = 9e-04
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +1
Query: 13 SDTIENVKAKIQDKEGIP 66
SDTI+NVK+KIQDKEGIP
Sbjct: 172 SDTIDNVKSKIQDKEGIP 189
Score = 37.9 bits (84), Expect = 9e-04
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +1
Query: 13 SDTIENVKAKIQDKEGIP 66
SDTI+NVK+KIQDKEGIP
Sbjct: 248 SDTIDNVKSKIQDKEGIP 265
Score = 37.9 bits (84), Expect = 9e-04
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +1
Query: 13 SDTIENVKAKIQDKEGIP 66
SDTI+NVK+KIQDKEGIP
Sbjct: 324 SDTIDNVKSKIQDKEGIP 341
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 42.7 bits (96), Expect = 3e-05
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +2
Query: 35 KLKFKTKRESXPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 166
K + + K P+QQRLI+AGKQ+ D + Y+++ S LHLV
Sbjct: 27 KERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLV 70
Score = 25.0 bits (52), Expect = 6.7
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +1
Query: 13 SDTIENVKAKIQDKEGIP 66
+D + +K ++++KEGIP
Sbjct: 20 NDKVSRIKERVEEKEGIP 37
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 34.7 bits (76), Expect = 0.008
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 74 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 166
+QRLI+AG+ L+D +L Y IQ ++HLV
Sbjct: 43 RQRLIYAGRVLKDEESLKTYKIQDGHSIHLV 73
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 28.3 bits (60), Expect = 0.71
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 479 NPSYTAVASVPYRLEGTYLFVVVFEDHRAMTLPAV 375
NP+YT Y L TYL F++HR + AV
Sbjct: 144 NPAYTNSHQNSYSLNETYLSYDFFDNHRGASSSAV 178
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/50 (24%), Positives = 21/50 (42%)
Frame = +3
Query: 270 FTRVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 419
+ R+ +N + R C E F V++D H KC + ++ D
Sbjct: 228 YLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 62 SXPNQQRLIFAGKQLEDGRTLSDYNI 139
S PNQ AGK+L+ R L DY+I
Sbjct: 474 SEPNQGDTRKAGKRLKYSRNLDDYHI 499
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 24.6 bits (51), Expect = 8.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 52 KEGIPSQSTEVDLCWKAAGRW 114
+ I T VDL W+AAG++
Sbjct: 1169 ERAIDPSGTNVDLLWRAAGKF 1189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,298
Number of Sequences: 5004
Number of extensions: 34561
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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