Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_N13
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   2.1  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    26   3.7  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   4.9  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    25   6.5  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   6.5  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    25   6.5  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    25   8.6  

>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 138 WVKTNKYGGVETAILRTAPGPVCWPIIGSLH 230
           W K NKYG +    + +  G VCW  +GS +
Sbjct: 447 WKKMNKYGMIIGCPMGSITGVVCW--VGSCY 475


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = +3

Query: 18  WFCLLIKILYP-----NYKYEFVNHCIIRFRIGGL*XCLEGRPVRWVKTNKYGGV 167
           W C  +K+LYP       + + VN C +R R   L   L+ +P   +K +   GV
Sbjct: 37  WICKELKLLYPEISKHGLRKKIVNACQLRARNYPLQYILKSQPFGNIKIDCQQGV 91


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 171 TAILRTAPGPVCWPIIGSLHLLGGHESPFQAFTELSKKYGD 293
           T++   A G  C   + S  LL  H+SP   F  +SK  GD
Sbjct: 244 TSVFVLADGTACIFTLSSSTLLKLHQSPEPHFELISKYSGD 284


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 185 DRTGARLLAHYRESTPSGRP 244
           D   AR +AH +ESTP  +P
Sbjct: 235 DEKIARFIAHLKESTPDKKP 254


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 351 IREVLNQNGNVVAGRPD-FLRFHKLFAGDRNN 443
           +RE+ +Q   + AGRPD  LRF    +G +N+
Sbjct: 70  LRELFDQRRLLEAGRPDGVLRFRPKKSGPKND 101


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 153 KYGGVETAILRTAPGPVCWPIIGSLHLLGGHE 248
           KY GV    L    G   WP+   + L+GGHE
Sbjct: 41  KYTGVCHTDLHALQGD--WPLPAKMPLIGGHE 70


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 210 PIIGSLHLLGGHESPFQAFTELSKKYGDIFS 302
           P +GS    G    P+  F E   KYGD+F+
Sbjct: 41  PFVGSAVAYG--MDPYVFFRECRAKYGDVFT 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,058
Number of Sequences: 5004
Number of extensions: 39634
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)