Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_N13
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.4  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
 Frame = -3

Query: 439 FRSPAKSLWKRRKSGRPATTLPF*FKTSLIRDKLLTTTQSALPNLTLKMSPYFFDSSVK- 263
           FRS   SL   ++SGRP        K  +  D+  TT + A     L +S    ++ +K 
Sbjct: 50  FRSGDFSLKDEKRSGRPVEVDDDLIKAIIDSDRHSTTREIA---EKLHVSHTCIENHLKQ 106

Query: 262 ---AWKGDSWPPRRCRLPIMGQQTGPGAVLRMAVSTPPYL 152
                K D+W P   +   + Q+     +L+      P+L
Sbjct: 107 LGYVQKLDTWVPHELKEKHLTQRINSCDLLKKRNENDPFL 146


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 126 RPVRWVKTNKYGGVETAILR 185
           + V W+K  K  G+E A+LR
Sbjct: 337 KTVSWLKDGKPLGLEEAVLR 356


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 221 PDNGPANGPRCGP*NGRLDSAIF 153
           P   PA+ P C   NG   SA F
Sbjct: 885 PSYKPASTPGCSSKNGEPTSAAF 907


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 510 GPKQHTDSYAXIGTV 554
           GP  ++D +A IGT+
Sbjct: 204 GPSYNSDIFAMIGTI 218


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 177 WPSRLRHIYS 148
           WPS LR IYS
Sbjct: 213 WPSDLRTIYS 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,391
Number of Sequences: 438
Number of extensions: 2868
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)