Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_N11
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 32 0.082
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 28 1.0
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 1.3
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.3
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 27 2.3
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 4.1
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 26 4.1
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 7.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.4
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.9 bits (69), Expect = 0.082
Identities = 28/110 (25%), Positives = 45/110 (40%)
Frame = +1
Query: 172 EASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKWDAEPGQYYTLAMT 351
EA Q+ V+P P + G +VK PT K V +D P + + +
Sbjct: 690 EAGQLNEPVVPPLPPHDETQEPQVGGDVKATEHTQPT--KTPAIVIYDYSPEEENEIELV 747
Query: 352 DPDAPSRKEPTFREWHHWLVGNIQGQRGKLRRNFVPVRGLWTSGKDRPAQ 501
+ + E W WL N +GQ+G N+V + G + + PA+
Sbjct: 748 ENEQIQILEFVDDGW--WLGENSKGQQGLFPSNYVEITGPNETANNPPAE 795
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 271 LTPTLVKDEPSVKWDAEPGQYYTLAMTDPDAPSRKEPTFREWHHWL 408
+ P L+ EP +KW ++ Q++ D D R P H W+
Sbjct: 299 MPPPLLPQEPGIKW-SKSFQHFLCVCLDKDKTRRPGPQKMLTHPWV 343
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 595 FEIGTFVARSVSESRLVECELRWLF 521
F +G FVARS+ +SR++ + LF
Sbjct: 1375 FALGQFVARSIYDSRIISIQFNPLF 1399
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = -3
Query: 420 DVANQPVVPFAKCGFFTGRRIRVGHGQSVVLSWLRVPFH*RLVFHQS-----WSQLITFF 256
D + + A+C F + + + +S++ S +R+ ++ + ++ + W Q I +
Sbjct: 438 DYLDNDIYVHARCLFLLTKTLNLDSLKSILCSRVRLYYNIEIAYYFTDVLLKWFQPIIRY 497
Query: 255 NFDSAWVFY 229
FD+A +FY
Sbjct: 498 EFDNALIFY 506
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 27.1 bits (57), Expect = 2.3
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +1
Query: 76 ICFKHSFF--SILVATMVNFRVLTRAMSTVAKSFEASQVVPDVIPKAPAALLQVKYPSGV 249
+C SF S + T+ NF + ST++ + +++ PD + A LL K V
Sbjct: 89 LCVYQSFVKKSASLDTVANFLDFSTDFSTLSTKKDETEIAPDCLHYI-AELLFQKKEREV 147
Query: 250 EVKEGNELTPTL 285
+ K NELT L
Sbjct: 148 KEKWKNELTEKL 159
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +3
Query: 486 RQACTDTCSSCTNNHRSSHSTSRD----SLTLRATNVPISKLPSSP 611
+Q +D+ S ++NH S+H T D S + ++ P +LP+SP
Sbjct: 36 KQEKSDSTLSSSSNHDSNHDTPADVDNSSNVNKNSSSPERELPTSP 81
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +2
Query: 437 NSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANF 592
N+G QY G P+ TG + + QP + F +P+ T + F
Sbjct: 329 NTGFVQPQYTGFVQPQHTGFVQPQATGFMQPQRTGFVQPQATGFVQPQATGF 380
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 193 DVIPKAPAALLQVKYPSGVEVKEGNELTPTLVKDE 297
D+I K L++ +P G + LTP VK E
Sbjct: 994 DLISKGATKPLEIAFPDGASILVAFRLTPVPVKLE 1028
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 510 SSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT 623
SS T++ +S ST+ SL +TN S P+S +++
Sbjct: 142 SSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSS 179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,151
Number of Sequences: 5004
Number of extensions: 60415
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -