Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_N07
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   202   4e-53
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   202   4e-53
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   3.5  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   8.1  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  202 bits (492), Expect = 4e-53
 Identities = 94/150 (62%), Positives = 119/150 (79%)
 Frame = +3

Query: 126 PXKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQ 305
           P KFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV+
Sbjct: 2   PPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTVK 61

Query: 306 LTVQNRQAQIAVVPSAAALIIRALKEPPRDRXXXXXXXXXXXXSLEDVIGIAKIMXNRSM 485
           LT+QNRQA ++VVPSA+AL+I+ALKEP RDR            SL+++I +A+ M  +S+
Sbjct: 62  LTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSL 121

Query: 486 ARYLSGSXKEILGTAQSVGCTVEGXPPHDL 575
           A+ LSG+ KEILGTA SVGCTV+G  PHD+
Sbjct: 122 AKELSGTVKEILGTAFSVGCTVDGKNPHDV 151


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  202 bits (492), Expect = 4e-53
 Identities = 94/150 (62%), Positives = 119/150 (79%)
 Frame = +3

Query: 126 PXKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQ 305
           P KFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV+
Sbjct: 2   PPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTVK 61

Query: 306 LTVQNRQAQIAVVPSAAALIIRALKEPPRDRXXXXXXXXXXXXSLEDVIGIAKIMXNRSM 485
           LT+QNRQA ++VVPSA+AL+I+ALKEP RDR            SL+++I +A+ M  +S+
Sbjct: 62  LTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSL 121

Query: 486 ARYLSGSXKEILGTAQSVGCTVEGXPPHDL 575
           A+ LSG+ KEILGTA SVGCTV+G  PHD+
Sbjct: 122 AKELSGTVKEILGTAFSVGCTVDGKNPHDV 151


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 404 LFTITRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHS 297
           +FT+ R  LK   +   CR N +  GLS   C  +S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 202 DDVAPTSPPTHRKFTILI 149
           D++A T PP HRK  IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,969
Number of Sequences: 5004
Number of extensions: 44140
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)