Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_N07
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1026 + 30214437-30214937                                        197   5e-51
02_05_0416 + 28791512-28792012                                        194   6e-50
02_05_0528 - 29782382-29782864,29782994-29783092,29783319-297833...    28   6.3  
07_03_0313 + 16620817-16621515                                         27   8.3  
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488...    27   8.3  
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332...    27   8.3  

>04_04_1026 + 30214437-30214937
          Length = 166

 Score =  197 bits (481), Expect = 5e-51
 Identities = 97/151 (64%), Positives = 118/151 (78%), Gaps = 1/151 (0%)
 Frame = +3

Query: 126 PXKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKITV 302
           P K DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++TV
Sbjct: 2   PPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTV 61

Query: 303 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRXXXXXXXXXXXXSLEDVIGIAKIMXNRS 482
           +LTVQNRQA+++VVPSAAAL+I+ALKEP RDR            SL+DVI IA+IM NRS
Sbjct: 62  KLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNRS 121

Query: 483 MARYLSGSXKEILGTAQSVGCTVEGXPPHDL 575
           MA+ ++G+ KEILGT  SVGCTV+G  P DL
Sbjct: 122 MAKEMAGTVKEILGTCVSVGCTVDGKDPKDL 152


>02_05_0416 + 28791512-28792012
          Length = 166

 Score =  194 bits (472), Expect = 6e-50
 Identities = 95/151 (62%), Positives = 117/151 (77%), Gaps = 1/151 (0%)
 Frame = +3

Query: 126 PXKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKITV 302
           P K DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++TV
Sbjct: 2   PPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTV 61

Query: 303 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRXXXXXXXXXXXXSLEDVIGIAKIMXNRS 482
           +LTVQNRQA+++VVPSAAAL+I+ALKEP RDR            SL+DVI IA++M  RS
Sbjct: 62  KLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVMRPRS 121

Query: 483 MARYLSGSXKEILGTAQSVGCTVEGXPPHDL 575
           MA+ ++G+ KEILGT  SVGCTV+G  P DL
Sbjct: 122 MAKEMAGTVKEILGTCVSVGCTVDGKDPKDL 152


>02_05_0528 -
           29782382-29782864,29782994-29783092,29783319-29783387,
           29783781-29783888,29783965-29784274,29784772-29784812,
           29784886-29784942,29785290-29785448,29785587-29785655,
           29785728-29785877,29785967-29786098,29786347-29786433,
           29786516-29786686,29786760-29786960,29787348-29787416,
           29787510-29787618,29787887-29788005,29788676-29788780,
           29789377-29789755,29790022-29790150,29790223-29790402,
           29791310-29791469,29791604-29791744,29791832-29792021,
           29792100-29792161,29792879-29793107
          Length = 1335

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 235 DRPRGPILGAKDDVAPTSPPTHRKFTILISFGSNL 131
           D   GP  G  DD + T P  H + T  I F  N+
Sbjct: 646 DEDSGPRPGTSDDSSATKPAEHNESTAEILFNPNV 680


>07_03_0313 + 16620817-16621515
          Length = 232

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 286 PFQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFTILI 149
           PF     +A++      D     +LGAK D+   S P H K  +L+
Sbjct: 15  PFGQRCRIALAEKKLPYDYSEQELLGAKSDLLLRSNPIHAKVPVLL 60


>04_04_1551 -
           34348110-34348225,34348468-34348606,34348658-34348896,
           34349042-34349140,34349207-34350188,34350737-34350832,
           34350936-34351064,34351253-34351332,34351420-34351661,
           34351743-34352692
          Length = 1023

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +3

Query: 162 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 263
           N +C G E G  S  AP++ PLG+ PK  G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765


>01_01_0447 -
           3327727-3328144,3328438-3328688,3328820-3328909,
           3329061-3329159,3329240-3329353,3329450-3329555,
           3329661-3329740,3329913-3330173,3330271-3330507,
           3330635-3330922
          Length = 647

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 211 GAKDDVAPTSPPTHRKFTILISFGSNLXGHFVDYLVQ 101
           GA+ ++ P+  P   +   +I   SN     VD+LVQ
Sbjct: 245 GAQQELGPSKTPLGLRLEYMICEASNKSSQLVDFLVQ 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,527,936
Number of Sequences: 37544
Number of extensions: 332509
Number of successful extensions: 758
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)