Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_N04
(550 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a pr... 214 2e-55
BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a ... 214 2e-55
BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a ... 214 2e-55
BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a ... 214 2e-55
AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a ... 214 2e-55
AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a ... 214 2e-55
X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA ... 158 1e-38
AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein L18a-... 157 2e-38
AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a ... 94 3e-19
>L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 214 bits (522), Expect = 2e-55
Identities = 101/166 (60%), Positives = 119/166 (71%)
Frame = +2
Query: 2 EVIGRXXXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXX 181
+V+GR Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GEIV
Sbjct: 11 KVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEK 70
Query: 182 XXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 361
NFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KVE
Sbjct: 71 SPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVE 130
Query: 362 VIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 499
I A+ CRRP VKQFH+S I+FPLP RV + F KRP+T+F
Sbjct: 131 EIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 214 bits (522), Expect = 2e-55
Identities = 101/166 (60%), Positives = 119/166 (71%)
Frame = +2
Query: 2 EVIGRXXXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXX 181
+V+GR Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GEIV
Sbjct: 11 KVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEK 70
Query: 182 XXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 361
NFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KVE
Sbjct: 71 SPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVE 130
Query: 362 VIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 499
I A+ CRRP VKQFH+S I+FPLP RV + F KRP+T+F
Sbjct: 131 EIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 214 bits (522), Expect = 2e-55
Identities = 101/166 (60%), Positives = 119/166 (71%)
Frame = +2
Query: 2 EVIGRXXXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXX 181
+V+GR Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GEIV
Sbjct: 11 KVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEK 70
Query: 182 XXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 361
NFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KVE
Sbjct: 71 SPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVE 130
Query: 362 VIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 499
I A+ CRRP VKQFH+S I+FPLP RV + F KRP+T+F
Sbjct: 131 EIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 214 bits (522), Expect = 2e-55
Identities = 101/166 (60%), Positives = 119/166 (71%)
Frame = +2
Query: 2 EVIGRXXXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXX 181
+V+GR Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GEIV
Sbjct: 11 KVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEK 70
Query: 182 XXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 361
NFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KVE
Sbjct: 71 SPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVE 130
Query: 362 VIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 499
I A+ CRRP VKQFH+S I+FPLP RV + F KRP+T+F
Sbjct: 131 EIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a
variant protein.
Length = 176
Score = 214 bits (522), Expect = 2e-55
Identities = 101/166 (60%), Positives = 119/166 (71%)
Frame = +2
Query: 2 EVIGRXXXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXX 181
+V+GR Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GEIV
Sbjct: 11 KVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEK 70
Query: 182 XXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 361
NFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KVE
Sbjct: 71 SPLRVKNFGIWLRYDSRSGTHNMYREYRDLTAAGAVTQCYRDMGARHRARAHSIQIMKVE 130
Query: 362 VIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 499
I A+ CRRP VKQFH+S I+FPLP RV + F KRP+T+F
Sbjct: 131 EIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 214 bits (522), Expect = 2e-55
Identities = 101/166 (60%), Positives = 119/166 (71%)
Frame = +2
Query: 2 EVIGRXXXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXX 181
+V+GR Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GEIV
Sbjct: 11 KVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEK 70
Query: 182 XXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 361
NFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KVE
Sbjct: 71 SPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVE 130
Query: 362 VIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 499
I A+ CRRP VKQFH+S I+FPLP RV + F KRP+T+F
Sbjct: 131 EIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA for
ORF. ).
Length = 140
Score = 158 bits (383), Expect = 1e-38
Identities = 71/100 (71%), Positives = 80/100 (80%)
Frame = +2
Query: 200 NFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAA 379
NFGIWL Y+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KVE I +
Sbjct: 41 NFGIWLSYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAVSK 100
Query: 380 CRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 499
CRRP VKQFH+S I+FPLP RV + F KRP+T+F
Sbjct: 101 CRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 140
>AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein
L18a-like protein protein.
Length = 136
Score = 157 bits (382), Expect = 2e-38
Identities = 75/125 (60%), Positives = 88/125 (70%)
Frame = +2
Query: 2 EVIGRXXXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXX 181
+V+GR Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE V
Sbjct: 11 KVVGRRLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGETVYCGQVFEK 70
Query: 182 XXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 361
NFGIWLR +SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+ VE
Sbjct: 71 SPLRVKNFGIWLRCDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMMVE 130
Query: 362 VIKAA 376
I A+
Sbjct: 131 EIAAS 135
>AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a
protein.
Length = 66
Score = 94.3 bits (224), Expect = 3e-19
Identities = 44/66 (66%), Positives = 51/66 (77%)
Frame = +2
Query: 302 RDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYK 481
RDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP RV + F K
Sbjct: 1 RDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTK 60
Query: 482 RPSTYF 499
RP+T+F
Sbjct: 61 RPNTFF 66
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,038,881
Number of Sequences: 237096
Number of extensions: 1605269
Number of successful extensions: 3504
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3504
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -