Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_N03
(650 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC071731-1|AAH71731.1| 328|Homo sapiens ATP synthase mitochondr... 73 7e-13
BC018781-1|AAH18781.1| 328|Homo sapiens ATP synthase mitochondr... 73 7e-13
BC008498-1|AAH08498.1| 328|Homo sapiens ATP synthase mitochondr... 73 7e-13
AL593856-2|CAI16978.1| 328|Homo sapiens ATP synthase mitochondr... 73 7e-13
AL136373-1|CAI14761.1| 328|Homo sapiens ATP synthase mitochondr... 73 7e-13
AK026004-1|BAB15316.1| 328|Homo sapiens protein ( Homo sapiens ... 73 7e-13
BC026355-1|AAH26355.2| 723|Homo sapiens Bardet-Biedl syndrome 1... 31 4.7
BC013795-1|AAH13795.1| 151|Homo sapiens BBS10 protein protein. 31 4.7
AJ007608-1|CAC22255.1| 963|Homo sapiens protocadherin alpha-C1 ... 30 6.2
AF152473-1|AAD43734.1| 818|Homo sapiens protocadherin alpha C1 ... 30 6.2
AF152303-1|AAD43697.1| 963|Homo sapiens protocadherin alpha C1 ... 30 6.2
>BC071731-1|AAH71731.1| 328|Homo sapiens ATP synthase mitochondrial
F1 complex assembly factor 1 protein.
Length = 328
Score = 73.3 bits (172), Expect = 7e-13
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Frame = +3
Query: 147 LKTNPYYEKYANRIAELQNTSPEEFMERVEQCDXXXXXXXXXXFASVDTRQFSSVLNPKQ 326
L+ NP+Y++Y ++I L+ + P F R+E+ S V
Sbjct: 71 LQANPFYDRYRDKIQLLRRSDPAAFESRLEKRSEFRKQPVGH---SRQGDFIKCVEQKTD 127
Query: 327 ALGKE-IN---VPDKKLEDIFKIELVIDKSSTEIKSIWEEYHQNKEVISATIPVDVYSNI 494
ALGK+ +N DK L IF IE+V +K++ EIK IW++Y K+ + A IP + + I
Sbjct: 128 ALGKQSVNRGFTKDKTLSSIFNIEMVKEKTAEEIKQIWQQYFAAKDTVYAVIPAEKFDLI 187
Query: 495 KETMNHFPVFLFPLPRSQGL*VYHVPDVWTHCSFYSIISL 614
P FL LPR +G + T F ++I++
Sbjct: 188 WNRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTALINI 227
>BC018781-1|AAH18781.1| 328|Homo sapiens ATP synthase mitochondrial
F1 complex assembly factor 1 protein.
Length = 328
Score = 73.3 bits (172), Expect = 7e-13
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Frame = +3
Query: 147 LKTNPYYEKYANRIAELQNTSPEEFMERVEQCDXXXXXXXXXXFASVDTRQFSSVLNPKQ 326
L+ NP+Y++Y ++I L+ + P F R+E+ S V
Sbjct: 71 LQANPFYDRYRDKIQLLRRSDPAAFESRLEKRSEFRKQPVGH---SRQGDFIKCVEQKTD 127
Query: 327 ALGKE-IN---VPDKKLEDIFKIELVIDKSSTEIKSIWEEYHQNKEVISATIPVDVYSNI 494
ALGK+ +N DK L IF IE+V +K++ EIK IW++Y K+ + A IP + + I
Sbjct: 128 ALGKQSVNRGFTKDKTLSSIFNIEMVKEKTAEEIKQIWQQYFAAKDTVYAVIPAEKFDLI 187
Query: 495 KETMNHFPVFLFPLPRSQGL*VYHVPDVWTHCSFYSIISL 614
P FL LPR +G + T F ++I++
Sbjct: 188 WNRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTALINI 227
>BC008498-1|AAH08498.1| 328|Homo sapiens ATP synthase mitochondrial
F1 complex assembly factor 1 protein.
Length = 328
Score = 73.3 bits (172), Expect = 7e-13
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Frame = +3
Query: 147 LKTNPYYEKYANRIAELQNTSPEEFMERVEQCDXXXXXXXXXXFASVDTRQFSSVLNPKQ 326
L+ NP+Y++Y ++I L+ + P F R+E+ S V
Sbjct: 71 LQANPFYDRYRDKIQLLRRSDPAAFESRLEKRSEFRKQPVGH---SRQGDFIKCVEQKTD 127
Query: 327 ALGKE-IN---VPDKKLEDIFKIELVIDKSSTEIKSIWEEYHQNKEVISATIPVDVYSNI 494
ALGK+ +N DK L IF IE+V +K++ EIK IW++Y K+ + A IP + + I
Sbjct: 128 ALGKQSVNRGFTKDKTLSSIFNIEMVKEKTAEEIKQIWQQYFAAKDTVYAVIPAEKFDLI 187
Query: 495 KETMNHFPVFLFPLPRSQGL*VYHVPDVWTHCSFYSIISL 614
P FL LPR +G + T F ++I++
Sbjct: 188 WNRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTALINI 227
>AL593856-2|CAI16978.1| 328|Homo sapiens ATP synthase mitochondrial
F1 complex assembly factor 1 protein.
Length = 328
Score = 73.3 bits (172), Expect = 7e-13
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Frame = +3
Query: 147 LKTNPYYEKYANRIAELQNTSPEEFMERVEQCDXXXXXXXXXXFASVDTRQFSSVLNPKQ 326
L+ NP+Y++Y ++I L+ + P F R+E+ S V
Sbjct: 71 LQANPFYDRYRDKIQLLRRSDPAAFESRLEKRSEFRKQPVGH---SRQGDFIKCVEQKTD 127
Query: 327 ALGKE-IN---VPDKKLEDIFKIELVIDKSSTEIKSIWEEYHQNKEVISATIPVDVYSNI 494
ALGK+ +N DK L IF IE+V +K++ EIK IW++Y K+ + A IP + + I
Sbjct: 128 ALGKQSVNRGFTKDKTLSSIFNIEMVKEKTAEEIKQIWQQYFAAKDTVYAVIPAEKFDLI 187
Query: 495 KETMNHFPVFLFPLPRSQGL*VYHVPDVWTHCSFYSIISL 614
P FL LPR +G + T F ++I++
Sbjct: 188 WNRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTALINI 227
>AL136373-1|CAI14761.1| 328|Homo sapiens ATP synthase mitochondrial
F1 complex assembly factor 1 protein.
Length = 328
Score = 73.3 bits (172), Expect = 7e-13
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Frame = +3
Query: 147 LKTNPYYEKYANRIAELQNTSPEEFMERVEQCDXXXXXXXXXXFASVDTRQFSSVLNPKQ 326
L+ NP+Y++Y ++I L+ + P F R+E+ S V
Sbjct: 71 LQANPFYDRYRDKIQLLRRSDPAAFESRLEKRSEFRKQPVGH---SRQGDFIKCVEQKTD 127
Query: 327 ALGKE-IN---VPDKKLEDIFKIELVIDKSSTEIKSIWEEYHQNKEVISATIPVDVYSNI 494
ALGK+ +N DK L IF IE+V +K++ EIK IW++Y K+ + A IP + + I
Sbjct: 128 ALGKQSVNRGFTKDKTLSSIFNIEMVKEKTAEEIKQIWQQYFAAKDTVYAVIPAEKFDLI 187
Query: 495 KETMNHFPVFLFPLPRSQGL*VYHVPDVWTHCSFYSIISL 614
P FL LPR +G + T F ++I++
Sbjct: 188 WNRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTALINI 227
>AK026004-1|BAB15316.1| 328|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22351 fis, clone HRC06325. ).
Length = 328
Score = 73.3 bits (172), Expect = 7e-13
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Frame = +3
Query: 147 LKTNPYYEKYANRIAELQNTSPEEFMERVEQCDXXXXXXXXXXFASVDTRQFSSVLNPKQ 326
L+ NP+Y++Y ++I L+ + P F R+E+ S V
Sbjct: 71 LQANPFYDRYRDKIQLLRRSDPAAFESRLEKRSEFRKQPVGH---SRQGDFIKCVEQKTD 127
Query: 327 ALGKE-IN---VPDKKLEDIFKIELVIDKSSTEIKSIWEEYHQNKEVISATIPVDVYSNI 494
ALGK+ +N DK L IF IE+V +K++ EIK IW++Y K+ + A IP + + I
Sbjct: 128 ALGKQSVNRGFTKDKTLSSIFNIEMVKEKTAEEIKQIWQQYFAAKDTVYAVIPAEKFDLI 187
Query: 495 KETMNHFPVFLFPLPRSQGL*VYHVPDVWTHCSFYSIISL 614
P FL LPR +G + T F ++I++
Sbjct: 188 WNRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTALINI 227
>BC026355-1|AAH26355.2| 723|Homo sapiens Bardet-Biedl syndrome 10
protein.
Length = 723
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 515 PSVPVSSSTLTGAMSLSCARCMDTLF-ILLHY*LIRSTKKMHQN 643
P++ S S L+ +M C + F ILLHY L+ KK HQ+
Sbjct: 581 PNMGTSQSYLSSSMPAGCVLPVGGNFDILLHYYLLNYAKKCHQS 624
>BC013795-1|AAH13795.1| 151|Homo sapiens BBS10 protein protein.
Length = 151
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 515 PSVPVSSSTLTGAMSLSCARCMDTLF-ILLHY*LIRSTKKMHQN 643
P++ S S L+ +M C + F ILLHY L+ KK HQ+
Sbjct: 9 PNMGTSQSYLSSSMPAGCVLPVGGNFEILLHYYLLNYAKKCHQS 52
>AJ007608-1|CAC22255.1| 963|Homo sapiens protocadherin alpha-C1
protein.
Length = 963
Score = 30.3 bits (65), Expect = 6.2
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +3
Query: 459 SATIPVDVYSNIKETMNHFPVFLFPLPRSQGL*VYHVP 572
SAT+ ++++ + + +++PV LFPLPR+ + V VP
Sbjct: 536 SATVTINLF--VVDRNDNYPVILFPLPRNGSVPVEIVP 571
>AF152473-1|AAD43734.1| 818|Homo sapiens protocadherin alpha C1
short form protein protein.
Length = 818
Score = 30.3 bits (65), Expect = 6.2
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +3
Query: 459 SATIPVDVYSNIKETMNHFPVFLFPLPRSQGL*VYHVP 572
SAT+ ++++ + + +++PV LFPLPR+ + V VP
Sbjct: 536 SATVTINLF--VVDRNDNYPVILFPLPRNGSVPVEIVP 571
>AF152303-1|AAD43697.1| 963|Homo sapiens protocadherin alpha C1
protein.
Length = 963
Score = 30.3 bits (65), Expect = 6.2
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +3
Query: 459 SATIPVDVYSNIKETMNHFPVFLFPLPRSQGL*VYHVP 572
SAT+ ++++ + + +++PV LFPLPR+ + V VP
Sbjct: 536 SATVTINLF--VVDRNDNYPVILFPLPRNGSVPVEIVP 571
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,932,537
Number of Sequences: 237096
Number of extensions: 1835326
Number of successful extensions: 11314
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11308
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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