Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_N02
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0484 - 22621614-22621676,22621798-22621911,22622006-226224... 56 2e-08
01_05_0485 - 22628999-22629325,22630340-22630450,22630888-226310... 31 0.80
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 29 3.2
06_03_0815 - 24905641-24905874,24905974-24906044,24906678-249068... 29 4.2
06_03_0083 + 16374830-16374922,16375917-16375974,16377893-163780... 28 5.6
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 28 5.6
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 28 7.4
09_02_0053 - 3665202-3665900,3666109-3666359,3666612-3666938,366... 27 9.8
08_02_0911 + 22530370-22530497,22531083-22531126,22531224-225312... 27 9.8
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540... 27 9.8
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522... 27 9.8
04_04_1566 + 34458976-34459111,34459761-34459915,34459996-344600... 27 9.8
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 27 9.8
>01_05_0484 -
22621614-22621676,22621798-22621911,22622006-22622453,
22623052-22623179,22623747-22623821,22623954-22624040
Length = 304
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/77 (33%), Positives = 42/77 (54%)
Frame = +1
Query: 166 MVVFTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERY 345
MV F C CG+ ++KPK+ H+ + + LSC+DC + F + + H +CI+E E+Y
Sbjct: 1 MVWFQCEDCGDDLKKPKLAGHFRSCSAYR---LSCIDCGEFFTQETVQGHTQCISEAEKY 57
Query: 346 SGKGFTAKEKKGEKKQN 396
KG + KQ+
Sbjct: 58 GPKGQNKASNNAQGKQD 74
>01_05_0485 -
22628999-22629325,22630340-22630450,22630888-22631034,
22631283-22631337,22631761-22632134,22632926-22633000,
22633419-22633670
Length = 446
Score = 31.1 bits (67), Expect = 0.80
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 262 LSCMDCFKDFLGKDYESHIKCITEEERY 345
LSC+DC + F + + H +CI+ E+Y
Sbjct: 85 LSCIDCGESFSQETVQGHAQCISGAEKY 112
>02_05_0672 +
30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 29.1 bits (62), Expect = 3.2
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = +2
Query: 377 RVRKNKMLGSRCCSQF*MSKKVHLKMYVG--LLRQ*ASITIH--HERSLSLLILSKMSVD 544
+VR +KM+GS+C +F M+ + L+ LL++ + I + HERSL+ IL M
Sbjct: 326 QVRHDKMVGSKCSIKF-MTDGILLREVQSDFLLKRYSVIILDEAHERSLNTDILIGMLSR 384
Query: 545 IKLIQKTL 568
I I+K+L
Sbjct: 385 IIKIRKSL 392
>06_03_0815 -
24905641-24905874,24905974-24906044,24906678-24906847,
24906862-24906955,24907904-24907948,24908599-24909631
Length = 548
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 116 HFAFKTNSPNSHVFYKKWLFLHAVIVGSLFRSPKWKSIISLNVGIKIQ 259
H+A NS H+ + ++ + A + SLF+ P I + V + Q
Sbjct: 461 HYANFPNSVRKHILFVIFVLMDAEVRNSLFKEPVLHDAIKIGVNFRNQ 508
>06_03_0083 +
16374830-16374922,16375917-16375974,16377893-16378089,
16378176-16378292,16378437-16378497,16378603-16378691,
16378808-16378882,16378992-16379080,16379203-16379252,
16379539-16379699,16380004-16380132,16380548-16380928
Length = 499
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Frame = +2
Query: 125 FKTNSPNSHVFYKKWLFLHAVI-VGSLFRSPKWKSIISLNVGIKIQICHVWTVSKIF*EK 301
F N P+ +F+ HA + F W SI+ + VGI +Q+ + ++
Sbjct: 312 FWFNRPDWVLFFIHLTLFHATPGLKKCFHENIWLSIVEVIVGISLQVLCSYITFPLY--A 369
Query: 302 IMNRISSALLK---KKDTLEKVSQLRRKRVRKNKM 397
++ ++ S + K ++ T++ + R+K + K K+
Sbjct: 370 LVTQMGSNMKKTIFEEQTMKALMNWRKKAMEKKKV 404
>04_02_0031 +
8874025-8874180,8882152-8882550,8882651-8882987,
8883234-8884060
Length = 572
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/87 (18%), Positives = 39/87 (44%)
Frame = +1
Query: 172 VFTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERYSG 351
V+ H ES +K K ++ + K DC ++L ++ +H+K +++
Sbjct: 461 VYLMRHKSESFEKFKKFQNEVQNHLGKTTKYLRSDCGGEYLSLEFGNHLKKCGIAPQFTP 520
Query: 352 KGFTAKEKKGEKKQNAWVEMLQSVLDE 432
G E++ ++M++S++ +
Sbjct: 521 PGTPQWNGVSERRNRTLLDMVRSMMSQ 547
>01_05_0279 +
20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 27.9 bits (59), Expect = 7.4
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Frame = +1
Query: 355 GFTAKEKKGEKKQNAWVEM---LQSVLDEQKSAPQ-NVRRIIETISK--HNNTPRKKPKF 516
GFTAK KK K AW + LQ + K+A + +R + I K H+ +P + +F
Sbjct: 636 GFTAKMKKRIKHVKAWRRLALKLQDIKQRLKNADERKIRYDLSGIEKNGHSKSPEQSFQF 695
Query: 517 INFVKNVCGHKTNPKDIDQAW 579
+++ G + N K++ W
Sbjct: 696 AR-EEDLVGIEIN-KELLMQW 714
>09_02_0053 -
3665202-3665900,3666109-3666359,3666612-3666938,
3667017-3667242,3667328-3667846,3668789-3668863,
3668963-3669052,3669142-3669222,3672176-3672222,
3672620-3672685,3673834-3673930,3673983-3674046,
3674160-3674278,3674448-3674563,3676675-3676708
Length = 936
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/70 (21%), Positives = 34/70 (48%)
Frame = +2
Query: 38 KYKTVIHKITYTSENQILIILKFKVIHFAFKTNSPNSHVFYKKWLFLHAVIVGSLFRSPK 217
++K + K + + Q+ I++ V+H N P++ ++ + ++H + +G + K
Sbjct: 575 RFKVLASKPFFPYKVQVKIVIACCVLHNWILDNGPDNIIYDEARWYIHNMDIGGSNKHGK 634
Query: 218 WKSIISLNVG 247
KS VG
Sbjct: 635 GKSKARKGVG 644
>08_02_0911 +
22530370-22530497,22531083-22531126,22531224-22531267,
22531428-22531946,22532032-22532257,22532336-22532662,
22532915-22533165,22533374-22534072
Length = 745
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/70 (21%), Positives = 34/70 (48%)
Frame = +2
Query: 38 KYKTVIHKITYTSENQILIILKFKVIHFAFKTNSPNSHVFYKKWLFLHAVIVGSLFRSPK 217
++K + K + + Q+ I++ V+H N P++ ++ + ++H + +G + K
Sbjct: 384 RFKVLASKPFFPYKVQVKIVIACCVLHNWILDNGPDNIIYDEARWYIHNMDIGGSNKHGK 443
Query: 218 WKSIISLNVG 247
KS VG
Sbjct: 444 GKSKARKGVG 453
>08_02_0580 -
18953208-18953513,18953668-18953868,18953929-18954009,
18954096-18954410,18954493-18954636,18954733-18954822,
18954907-18954983,18955122-18955182,18955264-18955490,
18955581-18955740,18955825-18956025,18956114-18956209,
18956380-18956565,18956641-18956810,18957044-18957275,
18958652-18959029
Length = 974
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 449 KMYVGLLRQ*ASITIHHERSLSLLILSKM 535
+ Y LLR+ A++T H RS SL +LS +
Sbjct: 12 QQYRALLRKNATLTWRHRRSASLQLLSSL 40
>04_04_1624 -
34849385-34849410,34849748-34851052,34852121-34852294,
34852386-34852456,34852563-34852618,34853047-34853185,
34853310-34853695,34853801-34853851,34853936-34854021,
34854112-34854553,34856241-34856315,34856457-34856593,
34856679-34856838,34856917-34857012,34857093-34857247,
34857900-34858032
Length = 1163
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 190 CGESVQKPKVEKHYLTKCRNKNPNLSCMDC 279
CG + + KVEK LT + NP +C +C
Sbjct: 199 CGRAEAEEKVEKLNLTSEQINNPQSACGNC 228
>04_04_1566 +
34458976-34459111,34459761-34459915,34459996-34460091,
34460170-34460329,34460415-34460551,34460650-34460724,
34460826-34460864
Length = 265
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 190 CGESVQKPKVEKHYLTKCRNKNPNLSCMDC 279
CG + + KVEK LT + NP +C +C
Sbjct: 200 CGRAEAEEKVEKLNLTSEQINNPQSACGNC 229
>01_04_0017 -
15113479-15113580,15113950-15114117,15115011-15115229,
15115303-15115446,15115558-15115840,15115936-15115991,
15116067-15116216,15116299-15116385,15116463-15116498,
15116746-15116808,15116887-15116967,15117053-15117142,
15117349-15117426,15117510-15117731,15117788-15117835,
15117948-15118133,15120910-15121009,15121107-15121246
Length = 750
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 544 HKTNPKDIDQAWEFISVKLTDLSNVTQ 624
H+ D++Q WEF+ +T L N+ +
Sbjct: 4 HERKTIDLEQGWEFMQKGITKLKNILE 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,320,056
Number of Sequences: 37544
Number of extensions: 327408
Number of successful extensions: 967
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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