Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_M22
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...   134   6e-33
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.34 
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    28   0.78 
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    27   1.8  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    26   3.1  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   4.2  
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma...    25   5.5  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   5.5  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   5.5  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    25   7.3  
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    25   7.3  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    24   9.6  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    24   9.6  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    24   9.6  

>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score =  134 bits (324), Expect = 6e-33
 Identities = 65/139 (46%), Positives = 92/139 (66%), Gaps = 1/139 (0%)
 Frame = +2

Query: 11  MPQNEXIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQ 190
           MPQNE IE   + +GRR D+                      RGIKAK++ ++RR EKIQ
Sbjct: 1   MPQNEYIEESIRKHGRRFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQ 60

Query: 191 MKKKIKAHEEKNV-KHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP 367
           MKK IK HEE+N  +  ++   +GA+P YLLDR+ +S+AK+LS+ +KQKRKEKA K+ VP
Sbjct: 61  MKKTIKQHEERNATQRGSDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVP 120

Query: 368 IPKVRAQADAEVFKVLKSG 424
           +P+VR  A+ E+FKV+++G
Sbjct: 121 LPQVRGVAEEEMFKVIRTG 139


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -3

Query: 256 FGDLLCVMFDILLFVRFDFLFHLNLFIAAFLIEYF-SFDTAEFARLFSAFMRLTSF-TLP 83
           F  LL   F +L F+ F F F    F++   I YF SF    F  LF  F+ +  F +  
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHF--LFFFFLCVCVFLSFL 170

Query: 82  FSL 74
           FSL
Sbjct: 171 FSL 173


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 27.9 bits (59), Expect = 0.78
 Identities = 22/84 (26%), Positives = 45/84 (53%)
 Frame = +2

Query: 167 ERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEK 346
           E+ + K+++ ++     +K ++  TEK+ +  +     +R VQS  +   +M +QK +E 
Sbjct: 82  EQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDM-EQKLEEM 140

Query: 347 AGKWDVPIPKVRAQADAEVFKVLK 418
             K+     KV+A+ D EV + L+
Sbjct: 141 TDKY----TKVKAELD-EVHQALE 159


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 217 FVRFD-FLFHLNLFIAAFLIEYFSFDTAEFARLFSAFMRLTS 95
           FV  D FL+   LF    LI +F+     F  LFS F    S
Sbjct: 171 FVSVDSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNS 212


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 236 NTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPI 370
           N  K +E    +  +++D+  R+ +LSN+ K        K+ VPI
Sbjct: 145 NITKYSEADKMMSTVEKDILVRSFLLSNLKKDSNNSNTFKFRVPI 189


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +2

Query: 164 KERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPV 271
           + + NE  + + +  ++ E+N   NTE++AE + P+
Sbjct: 98  ENQENEADEAENEETSYSEQNHTENTEEIAEESRPL 133


>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 194 KKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQ-SRAKVLSN 319
           +KKIK+ +EK + H  + + E  L       +V+ S A++L+N
Sbjct: 83  EKKIKSKQEKEIAHALQSIQERELRERQQMSNVEASNAQLLTN 125


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +2

Query: 227 VKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVF 406
           V H   K     +PV    + +QS  ++L ++I+ +RKE  GK D  I  ++ +  +  F
Sbjct: 371 VTHEQAKFLLSVIPVNQDFKALQSYRRILDSVIQPERKE--GKLDNLINTLQDKKKSSTF 428


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 178 IAAFLIEYFSFDTAEFARLF-SAFMRLTSFTLP 83
           IAAFL  YFS   AEF   F S    LT+   P
Sbjct: 229 IAAFLSSYFSPPNAEFDSTFCSTLSSLTNSEKP 261


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 18/71 (25%), Positives = 36/71 (50%)
 Frame = +2

Query: 143 IKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNM 322
           +K KI  +E  +E ++  K+ K   E+N + +T  VAE   P    + +     + +++ 
Sbjct: 204 LKQKI--EEENDEILEDSKESKDENEENKETSTTNVAETDAP----EEETVDTVEEIADE 257

Query: 323 IKQKRKEKAGK 355
            K   KE++G+
Sbjct: 258 EKHSVKEESGE 268


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 260 ALPVYLLDRDVQSRAKVLSNMIKQKRKE 343
           +LP + +  D+ S   V  N+IK+K  E
Sbjct: 249 SLPAFKIQEDIPSEKIVCYNVIKEKSNE 276


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 170 RRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVY 274
           R+ +    KK+  + EE   K+  E   EG  P Y
Sbjct: 29  RKKDNSSGKKRSVSEEESQDKYEDEMKTEGEFPSY 63


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 176 NEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKA 349
           ++ IQ +K+    E  +  HNT  +  G +     D DV++  K  +N I++   +KA
Sbjct: 614 DDYIQFEKEFL--ETYSALHNTSSLLPGLVIYEEDDEDVEAAEKFYTNDIQRDLAKKA 669


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
 Frame = +2

Query: 155 IFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLD-------RDVQSRAKVL 313
           +++ +++    +  KK+KAH++K      E   E A  V   D       +DV++ A   
Sbjct: 48  VYHVQQKKASHKRSKKLKAHQDKAESKVNEGKNEAAKVVKEEDLKSSETGKDVETAAAAA 107

Query: 314 SNMIKQKRKEKAGK 355
           +   K+K+ +K  K
Sbjct: 108 AAAKKKKKNKKKVK 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,496,452
Number of Sequences: 5004
Number of extensions: 26109
Number of successful extensions: 106
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)