Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_M22
         (456 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960...   142   2e-34
05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884     29   1.8  
02_05_0492 - 29476883-29476949,29477030-29477166,29477292-294773...    29   2.3  
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540...    28   4.1  
12_01_0388 + 3059296-3060076,3060290-3061474,3061565-3061695,306...    27   7.2  
06_03_0612 + 22735613-22735643,22735747-22735849,22737154-227375...    27   9.5  

>07_03_1651 -
           28395369-28395436,28395524-28395575,28395857-28396092,
           28396362-28396419,28396509-28396577,28396686-28396791,
           28397104-28397171,28397266-28397385,28398144-28398231,
           28399433-28399534,28399699-28399757,28399866-28400003,
           28400222-28400473,28400508-28400593,28401061-28401165,
           28402351-28402516
          Length = 590

 Score =  142 bits (343), Expect = 2e-34
 Identities = 72/137 (52%), Positives = 85/137 (62%)
 Frame = +2

Query: 14  PQNEXIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQM 193
           PQ + IE HQK +GRRLDY                     L G K K F K+R  EK QM
Sbjct: 333 PQGDHIELHQKRHGRRLDYEERKRKRAAREVHKRSRDARQLLGAKGKRFAKKRYAEKAQM 392

Query: 194 KKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIP 373
           KK +K H+E   +   + V EGALP YLLDRD   RAKVLSN IKQKR EKAGKW+VP+P
Sbjct: 393 KKTLKMHDESTSRQKVDDVQEGALPPYLLDRDQTQRAKVLSNTIKQKRMEKAGKWEVPLP 452

Query: 374 KVRAQADAEVFKVLKSG 424
           KVR  A+ E+FKVL++G
Sbjct: 453 KVRPVAEEEMFKVLRTG 469


>05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884
          Length = 271

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 239 TEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAE 400
           TE++ EG   + L   D++   +   +M+K   KEK  K   P P++  +A AE
Sbjct: 133 TEEILEGVARLRL-SNDIEFEEETFLDMMKTA-KEKRAKLKAPAPQIPMEARAE 184


>02_05_0492 -
           29476883-29476949,29477030-29477166,29477292-29477383,
           29477490-29477587,29477677-29477804,29477883-29478026,
           29478108-29478397,29478553-29478739,29479085-29479210,
           29480488-29480538,29480952-29481002,29482639-29484054
          Length = 928

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +2

Query: 263 LPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRA--QADAEVFKVLKSG 424
           LP+Y +DRD  +   +LS + +  R + A +  +P+ +  A  + DA+ + +L  G
Sbjct: 165 LPMYGMDRDTPALNSLLSALCRASRLDDA-RAAIPVARAEAGTRPDADSYAILLEG 219


>08_02_0580 -
           18953208-18953513,18953668-18953868,18953929-18954009,
           18954096-18954410,18954493-18954636,18954733-18954822,
           18954907-18954983,18955122-18955182,18955264-18955490,
           18955581-18955740,18955825-18956025,18956114-18956209,
           18956380-18956565,18956641-18956810,18957044-18957275,
           18958652-18959029
          Length = 974

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
 Frame = -3

Query: 223 LLFVRFDFLFHLNLFIAAFLIEYF-----SFDTAEFARLFSAFMR--LTSFTLPFS 77
           +LF+ F FLF LN+   AF+I  F     S  T  FA     F+   +T+F  P+S
Sbjct: 310 ILFLLF-FLFQLNMLSFAFMISTFVTKAASATTVGFAIFIIGFLTQLVTTFGFPYS 364


>12_01_0388 +
           3059296-3060076,3060290-3061474,3061565-3061695,
           3061793-3061873,3062329-3062367
          Length = 738

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = +2

Query: 134 LRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSR 301
           L+ + A    +E+   K++ +KK  A +EK+ ++  + V+       L+D   Q++
Sbjct: 624 LKRLNAHASGREKDGSKVEKRKKKSAKQEKSSRNVKQAVSSQTADTVLVDPPNQNQ 679


>06_03_0612 +
           22735613-22735643,22735747-22735849,22737154-22737511,
           22737592-22738033,22738146-22738189,22738293-22738340
          Length = 341

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 317 NMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKS 421
           ++++ +R +  GK+D PI +V        F  L S
Sbjct: 97  SLVRSRRSDSQGKFDTPISEVSMSTARRKFSTLSS 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,435,792
Number of Sequences: 37544
Number of extensions: 156643
Number of successful extensions: 427
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)