Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_M22
         (456 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   1.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   1.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.3  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   8.4  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 158 FNKERRNEKIQMKKKIKAHEEKNVKHNT 241
           + K+RR EK+  +K+    E  N K N+
Sbjct: 12  YRKDRRYEKLHNEKEKLLEERTNRKRNS 39


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 158 FNKERRNEKIQMKKKIKAHEEKNVKHNT 241
           + K+RR EK+  +K+    E  N K N+
Sbjct: 12  YRKDRRYEKLHNEKEKLLEERTNRKRNS 39


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 426 LPDFRTLNTSASAWALTLGM 367
           +PD RTLNT  S   L   M
Sbjct: 392 IPDLRTLNTLHSEKLLAFKM 411


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 182 KIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKV 310
           K ++ K ++  EE+++  ++     G   +YL   D   RAK+
Sbjct: 40  KEELTKLVQGFEEQDILTSSGVTLAGNRYIYLSGTDRVIRAKL 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,639
Number of Sequences: 438
Number of extensions: 1801
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)