Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_M17
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   5.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.3  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 183 WSASMYTTMKPPAASTCPAPFSSTWSPAPWTL 278
           W  S+ T M+   A+ C A +       PW L
Sbjct: 35  WRDSLPTKMRELNATACAALYERVEWSGPWIL 66


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 191 CAPTASQSPHGRHRWGRCRARQ 126
           C+P   Q+P  R   GR R R+
Sbjct: 392 CSPPPRQTPPSRKESGRRRRRR 413


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 15/60 (25%), Positives = 22/60 (36%)
 Frame = -1

Query: 328 EDEVVRTEDLSERSGADRVHGAGLQVDENGAGHVLAAGGFIVVYIDALQLQVRVPMVGTG 149
           E+  +R +++    G D     G   DE+ AG   A+    V    A          GTG
Sbjct: 178 EERRLRPDEIKVEVGEDEFANGGAARDESKAGSTDASTPATVTTTGATTTLPAASATGTG 237


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 234 PAPFSSTWSPAPWTLSA 284
           P  F S W P P+ L+A
Sbjct: 65  PEFFDSLWQPDPYFLNA 81


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 167 DSDLQLERINVYYNEASGGKYV 232
           D+ L+   I  Y N+  GG++V
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFV 93


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 403 RCSPQESXSCDCYRAST*HS 462
           RC P+   SC C R    H+
Sbjct: 479 RCPPEIHKSCICVRFIAEHT 498


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 403 RCSPQESXSCDCYRAST*HS 462
           RC P+   SC C R    H+
Sbjct: 479 RCPPEIHKSCICVRFIAEHT 498


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 340 AGLSEDEVVRTEDLSE 293
           AGL+E+EVV  + ++E
Sbjct: 62  AGLTEEEVVLAKTIAE 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,878
Number of Sequences: 438
Number of extensions: 3030
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)