Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_M15
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...    27   1.8  
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...    27   1.8  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    25   7.1  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    25   9.4  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.4  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   9.4  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 472 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKE 579
           +K+G +D     V    AHPFHVV +  M S  G +
Sbjct: 77  VKIGGKDSFHLRVR---AHPFHVVRINKMLSCAGAD 109


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 472 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKE 579
           +K+G +D     V    AHPFHVV +  M S  G +
Sbjct: 77  VKIGGKDSFHLRVR---AHPFHVVRINKMLSCAGAD 109


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 285 IKYIKASDGFFGCYRGLISKNAW 353
           IK I A +GF   Y+G++ +  W
Sbjct: 299 IKSIVAHEGFLALYKGIVPRVLW 321


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 520 IAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILG 642
           +++PF V   +M    I K + +  L   + + YK+ G+ G
Sbjct: 253 VSYPFEVCRRKMQIGGIRKNKSFLRLKQVVQTTYKEAGMRG 293


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 520  IAHPFHVVSVRMMAS-FIGKEEHYSSLLGAIVSIYK 624
            I  P   VS+ + A  F G  E+Y  L G+I + YK
Sbjct: 2155 ITWPLSAVSILIFALLFKGLPEYYRQLSGSIPAFYK 2190


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 519 NDCYRLHDHVSAS*FDVIFNFGFIIGDDV 433
           NDC R ++H + S F  +    F+  DD+
Sbjct: 635 NDCTRFYEHPTLSVFVKVEGIDFMKDDDI 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,900
Number of Sequences: 5004
Number of extensions: 57970
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)