Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_M15
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000264-10|AAC71129.2|  272|Caenorhabditis elegans Hypothetical...    42   4e-04
AF000264-8|AAK70649.2|  165|Caenorhabditis elegans Hypothetical ...    31   0.53 
AC006637-5|AAM54176.2|  844|Caenorhabditis elegans Glutamate rec...    28   5.0  
Z69662-5|CAA93500.3|  449|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>AF000264-10|AAC71129.2|  272|Caenorhabditis elegans Hypothetical
           protein F43E2.7a protein.
          Length = 272

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 22/58 (37%), Positives = 32/58 (55%)
 Frame = +1

Query: 472 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGI 645
           I+ G RD +++ VAV  A PF V   R +A  IG E  Y++   A+  I K +G  G+
Sbjct: 74  IRNGFRDSVIRVVAVTAARPFAVCFARQVAQVIGNETKYTTCAQALAVIGKQEGPGGL 131


>AF000264-8|AAK70649.2|  165|Caenorhabditis elegans Hypothetical
           protein F43E2.11 protein.
          Length = 165

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 98  NMDEIEKERIAALPSQILVTTICHPMEYAKVLIQLGYEP 214
           N+D + +  I +    ++  T  HP+   + LIQ GYEP
Sbjct: 61  NLDHLRQRSIQSEFQTLVAMTSVHPITVVRELIQFGYEP 99



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 243 FGRPAMILPNVFQYIKYIKASDGFFGCYRGLIS 341
           FG    ILPN+  Y+K +  +  F   ++GL S
Sbjct: 111 FGEEMAILPNILSYMKQLSKAKKFSTLFKGLDS 143


>AC006637-5|AAM54176.2|  844|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 6, isoform a protein.
          Length = 844

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 298 RLRMVSSVATGGLSARMLGLIAASQLTSKVIVAVGIDLPEIND 426
           R  ++S + TG  S R +GLI +  L   V  AV I +P IN+
Sbjct: 6   RFLLLSFLGTGVSSIR-IGLITSHHLEHSVRTAVNIIVPRINE 47


>Z69662-5|CAA93500.3|  449|Caenorhabditis elegans Hypothetical
           protein F56D5.6 protein.
          Length = 449

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = +1

Query: 406 DLPEINDPPNIVTDDEPKVEDYIKLGR 486
           ++ E+N+  N++ D++  +ED ++L R
Sbjct: 292 NVEEVNESGNVILDEDENIEDNVELAR 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,985,633
Number of Sequences: 27780
Number of extensions: 322345
Number of successful extensions: 703
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)